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Sed0022777 (gene) of Chayote v1 genome

Gene IDSed0022777
OrganismSechium edule (Chayote v1)
Description39S ribosomal protein L41-A, mitochondrial
Genome locationLG07:5921364..5925298
RNA-Seq ExpressionSed0022777
SyntenySed0022777
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR019189 - Ribosomal protein L27/L41, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135839.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus]2.5e-4090.32Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGL R MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+KT+D +E+A S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

XP_008461075.1 PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo]9.6e-4089.25Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGL R MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+ T+D +E+A S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

XP_022143129.1 39S ribosomal protein L41-A, mitochondrial [Momordica charantia]2.5e-4090.32Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGL RAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNY+VPDLTDFKLKPYVSQCP E+KT++ SE+A S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

XP_022982189.1 39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima]5.6e-4090.32Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGLAR+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIE KT++  E+  S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

XP_038897038.1 39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida]3.9e-4192.47Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGL RAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIE+KT+D +E+A S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

TrEMBL top hitse value%identityAlignment
A0A0A0KBX4 Uncharacterized protein1.2e-4090.32Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGL R MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+KT+D +E+A S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

A0A1S3CEC5 39S ribosomal protein L41-A, mitochondrial-like4.7e-4089.25Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGL R MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+ T+D +E+A S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

A0A6J1CNE9 39S ribosomal protein L41-A, mitochondrial1.2e-4090.32Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGL RAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNY+VPDLTDFKLKPYVSQCP E+KT++ SE+A S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

A0A6J1FQT8 39S ribosomal protein L41-A, mitochondrial-like3.0e-3989.25Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGLAR+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQC IE KT++  E+  S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

A0A6J1J3V5 39S ribosomal protein L41-A, mitochondrial-like2.7e-4090.32Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS
        MALGLILGLAR+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIE KT++  E+  S
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS

SwissProt top hitse value%identityAlignment
Q5BJX1 39S ribosomal protein L41, mitochondrial4.5e-0851.92Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +SKR PR + K +  K TGF+T +  +V + E +P +VVPDLT FKLKPYV+
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q6DJI4 39S ribosomal protein L41-A, mitochondrial7.0e-0945.95Show/hide
Query:  LGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +GLI  +AR + R      +  +SK+ P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Subjt:  LGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q6INF3 39S ribosomal protein L41-B, mitochondrial1.2e-0845.95Show/hide
Query:  LGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +GLI  +AR + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Subjt:  LGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q8IXM3 39S ribosomal protein L41, mitochondrial6.5e-0742.11Show/hide
Query:  LGLILGLARAMRRKRTSSLDILSSKRAPRDY--YKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +G++   AR + R     +   +SKR PR +   KG+  K  GF T    +V + E +P +VVPDLT FKLKPYVS
Subjt:  LGLILGLARAMRRKRTSSLDILSSKRAPRDY--YKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q9CQN7 39S ribosomal protein L41, mitochondrial4.5e-0850Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +SKR PR + K +  K TG +T    +V + E +P +VVPDLT FKLKPYV+
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Arabidopsis top hitse value%identityAlignment
AT4G09012.1 Mitochondrial ribosomal protein L271.1e-3373.91Show/hide
Query:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEM-KTNDGSETA
        M LGL+ G+ R  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPNYVVPDLT FKLKPYVSQCP+++ KTN+ +E +
Subjt:  MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEM-KTNDGSETA

AT5G39800.1 Mitochondrial ribosomal protein L273.7e-3777.27Show/hide
Query:  GLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETA
        GL++G+ R+ RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FKLKPYVSQCPI++ TN+ +E +
Subjt:  GLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETA

AT5G40080.1 Mitochondrial ribosomal protein L278.1e-3776.14Show/hide
Query:  GLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETA
        GL++G+ R+ RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FKLKPYVSQCP+++ TN+ +E +
Subjt:  GLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTGGGGCTGATATTAGGTCTCGCAAGAGCAATGAGGAGGAAGCGTACTTCATCTCTCGATATTCTCTCTTCGAAACGAGCTCCAAGAGATTATTACAAGGGCAA
GAATTGCAAGCCCACTGGTTTTCATACGCGCAAAGGTGGATACGTTGTGGTGCCTGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGCTCAAGCCTT
ATGTATCTCAATGCCCAATAGAAATGAAGACAAATGACGGCAGCGAAACAGCTAATTCATAA
mRNA sequenceShow/hide mRNA sequence
AACGAATGCATTTTATAATACCAAACCCATTTATCTCTTTTGTTCGTTTCGTCTTCCCTCTTCCCTTTTCTAGCAGCCGTCGTTGCTGGTCGCGATCTGGCAACGGTGCA
TCTTCTCCGACGCCGGCGTGAACCTCAGTATCAGCCTAGCCGAAGAAATTTCAGGGTTCTGGTTTTGTTCATTTGTCTCTAACTTCGAAATGGCGTTGGGGCTGATATTA
GGTCTCGCAAGAGCAATGAGGAGGAAGCGTACTTCATCTCTCGATATTCTCTCTTCGAAACGAGCTCCAAGAGATTATTACAAGGGCAAGAATTGCAAGCCCACTGGTTT
TCATACGCGCAAAGGTGGATACGTTGTGGTGCCTGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGCTCAAGCCTTATGTATCTCAATGCCCAATAG
AAATGAAGACAAATGACGGCAGCGAAACAGCTAATTCATAAGCGAAGAGGCGATTGGATTGGAAACAAGGGGGTGAAATGTTTTCATTACTCAGAGGCGACTGAAGTAAA
GAAATATGTACAAACCCTCTACCCTATATGATGAATAGCAAGAAGCCTTCAATTTTTTCTTTGCTTTCGTTTTTATTCTTCTAAAATACTTTTTATTATGGATTGAGTTT
GAACATTTGACCTTTTTTTGTTTCTAACCAATTCAATTATGCTCCAATTCGAGACTCAGCTGTGACATTACTCCTTCGATGTCTCCTGGTGCCTGGCTTAAGGACAGGCG
TGGTTACTCTTGTTTCAAAAAACAATTATGCTCCAATTGGCCCTTATAAAATGCTCTTGATTTTGTCGAGATGAGAAAGCTACATAACATTTGCTAAGTAGGAGAATGTA
GGTAGTTTCAATTTGTATACTCTTGCATTATC
Protein sequenceShow/hide protein sequence
MALGLILGLARAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEMKTNDGSETANS