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Sed0022823 (gene) of Chayote v1 genome

Gene IDSed0022823
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG13:1012391..1015278
RNA-Seq ExpressionSed0022823
SyntenySed0022823
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022945615.1 uncharacterized protein LOC111449801 [Cucurbita moschata]3.5e-4277.24Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS  K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQMENRA  +EDE DHP S +N
Subjt:  VPQMENRAVGDEDERDHPMSHVN

XP_022968364.1 uncharacterized protein LOC111467625 [Cucurbita maxima]3.9e-4176.42Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS  K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQMENRA  +EDE DH  S +N
Subjt:  VPQMENRAVGDEDERDHPMSHVN

XP_022984699.1 uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima]2.1e-3977.24Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRLRLDR L DTADSTLDS  K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQME RAV DEDERDHP+S VN
Subjt:  VPQMENRAVGDEDERDHPMSHVN

XP_023542542.1 uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo]3.5e-4277.24Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS  K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQMENRA  +EDE DHP S +N
Subjt:  VPQMENRAVGDEDERDHPMSHVN

XP_038882732.1 uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]3.3e-4075.81Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN----RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQ
        M SHVQF ETGPFWT EKH+ FLNSMEASFV+SM +N    RRRLRLDR LPDTADSTLDS  KD    H  S   RI+GRSSRRSRRISSLPHTS QDQ
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN----RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQ

Query:  VVPQMENRAVGDEDERDHPMSHVN
        VVPQ+E RAV DEDERDHPMS VN
Subjt:  VVPQMENRAVGDEDERDHPMSHVN

TrEMBL top hitse value%identityAlignment
A0A6J1E5I2 uncharacterized protein LOC111430892 isoform X11.3e-3977.24Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRL+LDR L DTADSTLDS  K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQME RAV DEDERDHPMS VN
Subjt:  VPQMENRAVGDEDERDHPMSHVN

A0A6J1G1G2 uncharacterized protein LOC1114498011.7e-4277.24Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS  K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQMENRA  +EDE DHP S +N
Subjt:  VPQMENRAVGDEDERDHPMSHVN

A0A6J1HZF8 uncharacterized protein LOC1114676251.9e-4176.42Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS  K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQMENRA  +EDE DH  S +N
Subjt:  VPQMENRAVGDEDERDHPMSHVN

A0A6J1J606 uncharacterized protein LOC111482903 isoform X28.7e-3977.24Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRLRLDR L DTADSTLDS  K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQME RAV DEDERDHP+S VN
Subjt:  VPQMENRAVGDEDERDHPMSHVN

A0A6J1JBA6 uncharacterized protein LOC111482903 isoform X11.0e-3977.24Show/hide
Query:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV
        M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRLRLDR L DTADSTLDS  K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQV
Subjt:  MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQV

Query:  VPQMENRAVGDEDERDHPMSHVN
        VPQME RAV DEDERDHP+S VN
Subjt:  VPQMENRAVGDEDERDHPMSHVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCACGTGCAATTCGGCGAAACGGGGCCGTTTTGGACGGAGGAGAAGCACGTGCTGTTCTTGAATTCTATGGAAGCTTCTTTCGTCAGATCAATGCTCCAAAA
TCGCCGCCGTCTACGGCTGGACCGCCTCCTTCCGGACACCGCCGACTCAACCTTAGATTCATCTCTTAAGGACACCAAATTAATCCATCCAATCTCCGGAGGTGGCAGGA
TCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAGAATAGAGCTGTTGGGGATGAAGAT
GAGAGAGACCATCCCATGTCACATGTTAACTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAACCATCCTAATTAAAACTATTATTTTTCTTAATCCTTAATTTTTTTTTTTTATTCTTCTTCTTCTTCAAATTCATCTCTGTGTTTTTTTTTCTTTTCTTATAAA
CCCTAGCTATGGCGTCGCACGTGCAATTCGGCGAAACGGGGCCGTTTTGGACGGAGGAGAAGCACGTGCTGTTCTTGAATTCTATGGAAGCTTCTTTCGTCAGATCAATG
CTCCAAAATCGCCGCCGTCTACGGCTGGACCGCCTCCTTCCGGACACCGCCGACTCAACCTTAGATTCATCTCTTAAGGACACCAAATTAATCCATCCAATCTCCGGAGG
TGGCAGGATCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAGAATAGAGCTGTTGGGG
ATGAAGATGAGAGAGACCATCCCATGTCACATGTTAACTGATAAATATATAAATTATTATGATTATTTTTGCATTTTCCCCACTTTATTTCTTCTTTTAATCTTTATGTC
TTTTCACAATAGTCTGTTACATCTAAATTAATGATGGTGTGAAAAAAGGCTTTAATTGGAAATTAGTGAACTTAATTGAGTGTGGAAGGATTAATTTTTGGCTACCTAGC
TAAGATAGGTTAGACATCACTCATTGCATGTTTTTACTTTAATTGTACATTCTTATATTTGTTTAGATCTTAGATATGCAAATGTTGGTAGTCACTAATCTAGAATGTAT
AGACAGCCAATTAAATTTGAGTCAAATTTTGTATTAAGTTTAT
Protein sequenceShow/hide protein sequence
MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQNRRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDED
ERDHPMSHVN