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Sed0022853 (gene) of Chayote v1 genome

Gene IDSed0022853
OrganismSechium edule (Chayote v1)
Descriptionmini zinc finger
Genome locationLG08:34911617..34913143
RNA-Seq ExpressionSed0022853
SyntenySed0022853
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006456 - ZF-HD homeobox protein, Cys/His-rich dimerisation domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036083.1 mini zinc finger protein 1 [Cucumis melo var. makuwa]3.1e-3680.95Show/hide
Query:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC
        MMKKRQVVVKRSS+G  SSS       NRN +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSN ALTCAACGCHRNFHRREV++ EVVC
Subjt:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC

Query:  EYSPP
        EYSPP
Subjt:  EYSPP

XP_004137410.1 mini zinc finger protein 1 [Cucumis sativus]1.2e-3580Show/hide
Query:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC
        MMKKRQVVVKRSS+G  SSS       NRN +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGS+ ALTCAACGCHRNFHRREV++ EVVC
Subjt:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC

Query:  EYSPP
        EYSPP
Subjt:  EYSPP

XP_007210942.1 mini zinc finger protein 3 [Prunus persica]3.2e-3380.61Show/hide
Query:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPN
        MKKRQVVVKR S G SSS     TSSS VR  VRYGECQKNHAAN+GGYAVDGC EF+A+GEEG+ EALTCAACGCHRNFHRREV+T EVVCEYSPPN
Subjt:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPN

XP_008442199.1 PREDICTED: mini zinc finger protein 1 [Cucumis melo]3.1e-3680.95Show/hide
Query:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC
        MMKKRQVVVKRSS+G  SSS       NRN +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSN ALTCAACGCHRNFHRREV++ EVVC
Subjt:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC

Query:  EYSPP
        EYSPP
Subjt:  EYSPP

XP_022949221.1 mini zinc finger protein 1 [Cucurbita moschata]1.7e-3783Show/hide
Query:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA
        MMKKRQV+VKR +DGSS+ ++ ++TSSS VR++VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSN ALTCAACGCHRNFHRREV+T EVVCEY PPNA
Subjt:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA

TrEMBL top hitse value%identityAlignment
A0A1S3B557 mini zinc finger protein 11.5e-3680.95Show/hide
Query:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC
        MMKKRQVVVKRSS+G  SSS       NRN +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSN ALTCAACGCHRNFHRREV++ EVVC
Subjt:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC

Query:  EYSPP
        EYSPP
Subjt:  EYSPP

A0A5A7SZK7 Mini zinc finger protein 11.5e-3680.95Show/hide
Query:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC
        MMKKRQVVVKRSS+G  SSS       NRN +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSN ALTCAACGCHRNFHRREV++ EVVC
Subjt:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC

Query:  EYSPP
        EYSPP
Subjt:  EYSPP

A0A5D3BJJ4 Mini zinc finger protein 11.5e-3680.95Show/hide
Query:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC
        MMKKRQVVVKRSS+G  SSS       NRN +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSN ALTCAACGCHRNFHRREV++ EVVC
Subjt:  MMKKRQVVVKRSSDGSSSSS-------NRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVC

Query:  EYSPP
        EYSPP
Subjt:  EYSPP

A0A6J1GBE8 mini zinc finger protein 18.0e-3883Show/hide
Query:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA
        MMKKRQV+VKR +DGSS+ ++ ++TSSS VR++VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSN ALTCAACGCHRNFHRREV+T EVVCEY PPNA
Subjt:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA

A0A6J1K9G7 mini zinc finger protein 18.0e-3883Show/hide
Query:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA
        MMKKRQV+VKR +DGSS+ ++ ++TSSS VR++VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSN ALTCAACGCHRNFHRREV+T EVVCEY PPNA
Subjt:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA

SwissProt top hitse value%identityAlignment
B8BIU8 Mini zinc finger protein 12.5e-2067.19Show/hide
Query:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYS
        VVRY ECQ+NHAA+IGG+AVDGC EF+A+G EG+  AL CAACGCHR+FHRREV+     C+ S
Subjt:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYS

Q2Q493 Mini zinc finger protein 33.2e-2866.67Show/hide
Query:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA
        MKKRQVV+K+     + +S+ +N         VRY ECQKNHAANIGGYAVDGC EF+A+   G ++ALTCAACGCHRNFHRREVDT EVVCEYSPPNA
Subjt:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA

Q2RB28 Mini zinc finger protein 12.5e-2067.19Show/hide
Query:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYS
        VVRY ECQ+NHAA+IGG+AVDGC EF+A+G EG+  AL CAACGCHR+FHRREV+     C+ S
Subjt:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYS

Q9CA51 Mini zinc finger protein 11.1e-3169.9Show/hide
Query:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNV---VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSP
        MMKKRQ+V+K+ S  S++SS+   TSSS+  +    VRY ECQKNHAANIGGYAVDGC EF+A G EG+ +AL CAACGCHRNFHR+EVDT EVVCEYSP
Subjt:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNV---VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSP

Query:  PNA
        PNA
Subjt:  PNA

Q9LJW5 Mini zinc finger protein 25.2e-2663.27Show/hide
Query:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPP
        M+KRQVV++R+S    S S  ++T+SS     VRYGECQKNHAA +GGYAVDGC EF+A+ GEEG+  ALTCAACGCHR+FHRRE++T EVVC+ + P
Subjt:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPP

Arabidopsis top hitse value%identityAlignment
AT1G18835.1 mini zinc finger2.3e-2966.67Show/hide
Query:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA
        MKKRQVV+K+     + +S+ +N         VRY ECQKNHAANIGGYAVDGC EF+A+   G ++ALTCAACGCHRNFHRREVDT EVVCEYSPPNA
Subjt:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA

AT1G74660.1 mini zinc finger 17.7e-3369.9Show/hide
Query:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNV---VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSP
        MMKKRQ+V+K+ S  S++SS+   TSSS+  +    VRY ECQKNHAANIGGYAVDGC EF+A G EG+ +AL CAACGCHRNFHR+EVDT EVVCEYSP
Subjt:  MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNV---VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSP

Query:  PNA
        PNA
Subjt:  PNA

AT2G02540.1 homeobox protein 213.7e-1965.52Show/hide
Query:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQE
        V++Y EC KNHAA +GG A+DGC EF+ +GEEGS EALTC+ C CHRNFHRRE + +E
Subjt:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQE

AT3G28917.1 mini zinc finger 23.7e-2763.27Show/hide
Query:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPP
        M+KRQVV++R+S    S S  ++T+SS     VRYGECQKNHAA +GGYAVDGC EF+A+ GEEG+  ALTCAACGCHR+FHRRE++T EVVC+ + P
Subjt:  MKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPP

AT4G24660.1 homeobox protein 223.7e-1955.84Show/hide
Query:  SSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDT
        S +G++SS       S  V   +RY EC KNHA NIGG+AVDGC EF+ +GE+G+ +AL CAACGCHRNFHR+E ++
Subjt:  SSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGAAAAGGCAAGTAGTTGTTAAAAGATCATCAGATGGATCATCATCATCATCAAATAGAAACAACACTTCATCTTCAACTGTGAGAAATGTTGTTAGATATGG
AGAATGCCAAAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGTTGCACTGAATTCTTAGCAAATGGAGAAGAAGGCTCTAATGAAGCTCTCACTTGTGCTG
CTTGTGGCTGCCATAGAAACTTCCATAGAAGAGAAGTTGATACTCAAGAAGTGGTTTGTGAGTACTCTCCTCCTAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
CTATTTTTAGTAAGGCCCTATAAATAAAAGCTCTCTAGACTAGCTAGGGTTTGGGGTTAAAGAATATACAGGCATAATTCTCACTAAAAAAATTCTCTTAGATTTCTCCC
CTCTCTCTCTCTCTCTTTATTTAGATTTTGATGAGTGAAGACATCAAAAACAAACCACCAAAACCAAAAACTCTCACAAACCAATTTCAACTCTTGATCTTACAAAGCCA
GGGTTTTGGTTTTGGTTTTGTTTCAAATCAAATATAATCTCCCATCACCATGATGAAGAAAAGGCAAGTAGTTGTTAAAAGATCATCAGATGGATCATCATCATCATCAA
ATAGAAACAACACTTCATCTTCAACTGTGAGAAATGTTGTTAGATATGGAGAATGCCAAAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGTTGCACTGAA
TTCTTAGCAAATGGAGAAGAAGGCTCTAATGAAGCTCTCACTTGTGCTGCTTGTGGCTGCCATAGAAACTTCCATAGAAGAGAAGTTGATACTCAAGAAGTGGTTTGTGA
GTACTCTCCTCCTAATGCTTGAAATCTTTTCTAAATTATTTATAAATTATATAATAATACTACATCTAATTTCTTTTGTTTTATAATTGAGAAATTGGGGTCGTCCAATT
GTAAACAGTCATCCACTATATATATATTCAAGCTTGAGATCTCCCAAAGAATATATCTTGAAGACTTAGACCTCTGCCAATAAGAGACAATACTATACCAAAACTTAATT
ACTACATCCCCAATTTTTATTATTAATTAACACCCTTTTGATACTTATATTTTGAATATTTATTGATGCCACAAACAATTGGCTGTGATTTGAACAATGAGAGATTCTGT
AAGTAAATTGTGTATTGATTTGCTATCTTTTTCCTTTCTGTAAAGTCTCTTCTTTGAATAGGAATGACTATTTGTGATTGAAAAGAAAAGACCAAAAGGAAAAGTAAAAC
ACTGCAGTTGAGTGGTGTATTATGTCAAGAAGAACTAATTTCTCTCCCTTATTTGATTCTGATTGTTGTTTTGGTAATGTATCAAATTTTGAAGCTTCCCTCCAGATGAT
ATTTAGAGAGATTTGTAGAGATGGGGTAGATTCGATTTAGTTTTTTTTTATAACCGTGAATCGAAGTTTTACCCTACTATATACACTCGGGAGCACCCGCGCCCATCTCA
AGGCGGGATGTTATCCTTCAAGTTTGATCTGATCATGTGATGTTTAATTAGTTAAAATTCATGGGGGCTTGCATTGATCAAACCATGACCTCATATAAAAGGAAGTTGCC
TTATCTTTTAAGCAATCATTTGCGGAAAGAAATATTATATCTCTCCTATCAAAGGCCCACAAAAATCTAATCATGACACATCTTTGTAATACAATTGGAGTGAATTTTAT
TACTAGAAGCTGACCTAAATCTCAAAACCCCTATTTAGAATTTAGATCTCCCTGTAGCTGTGTGCTGTGGGTTAGTTTGTTGTTTATTACGTTGGGC
Protein sequenceShow/hide protein sequence
MMKKRQVVVKRSSDGSSSSSNRNNTSSSTVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNEALTCAACGCHRNFHRREVDTQEVVCEYSPPNA