CuGenDBv2

Gene ID	Sed0022868
Organism	Sechium edule (Chayote v1)
Description	ELL-associated factor 2
Genome location	LG11:31960751..31964436
RNA-Seq Expression	Sed0022868
Synteny	Sed0022868
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0032783 - ELL-EAF complex (cellular component)
InterPro domains	IPR027093 - EAF family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579241.1 Ell-associated factor Eaf, partial [Cucurbita argyrosperma subsp. sororia]

8.9e-26

49.74

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP AK  + + +    + P + VEVE+IDIGE GN                                                        +++V+ G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALR QVNAEGREG  AAAALRAQVNA+GRD+QSSSSS+S S S SSSGS   SSDSEG+D
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

XP_008454810.1 PREDICTED: ELL-associated factor 2 [Cucumis melo]

3.1e-18

45.6

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP  K  + + +  + + P +PVEVERIDIGE GNA                                                       +E VE G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAE                  ALRAQVNA+GR +QSSSSS+SGS S SSSGS   SSDSEGSD
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

XP_022939831.1 ELL-associated factor 1 [Cucurbita moschata]

8.9e-26

49.74

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP AK  + + +    + P + VEVE+IDIGE GN                                                        +++V+ G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALR QVNAEGREG  AAAALRAQVNA+GRD+QSSSSS+S S S SSSGS   SSDSEG+D
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

XP_022993461.1 ELL-associated factor 1 [Cucurbita maxima]

8.9e-26

49.74

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP AK  + + +    + P + VEVE+IDIGE GN                                                        +++V+ G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALR QVNAEGREG  AAAALRAQVNA+GRD+QSSSSS+S S S SSSGS   SSDSEG+D
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

XP_038893321.1 ELL-associated factor 2-like [Benincasa hispida]

1.7e-29

53.89

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP AK  + + +    + P +PVEVERIDIGE GN                                                        +E VE G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALR QVNAEGREG  AAAALRAQV+A+GRDDQSSSSS+SGS S SSSGS   SSDSEGSD
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM56 EAF domain-containing protein

9.6e-18

45.31

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA------------------------------------------------------DEEVEIGF
        ++PP  K  + + +  + + P +PVEVERIDIGE GNA                                                      +E VE GF
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA------------------------------------------------------DEEVEIGF

Query:  DINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        DINIPHQNDTDDEIADVDDSGDEAEKGPNAAE                  ALRAQVNA+GR +QSSSSS+SGS S SSSGS   SSDSE SD
Subjt:  DINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

A0A1S3C0N3 ELL-associated factor 2

1.5e-18

45.6

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP  K  + + +  + + P +PVEVERIDIGE GNA                                                       +E VE G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAE                  ALRAQVNA+GR +QSSSSS+SGS S SSSGS   SSDSEGSD
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

A0A5A7T0X1 ELL-associated factor 2

1.5e-18

45.6

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP  K  + + +  + + P +PVEVERIDIGE GNA                                                       +E VE G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAE                  ALRAQVNA+GR +QSSSSS+SGS S SSSGS   SSDSEGSD
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

A0A6J1FGX9 ELL-associated factor 1

4.3e-26

49.74

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP AK  + + +    + P + VEVE+IDIGE GN                                                        +++V+ G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALR QVNAEGREG  AAAALRAQVNA+GRD+QSSSSS+S S S SSSGS   SSDSEG+D
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

A0A6J1JWD6 ELL-associated factor 1

4.3e-26

49.74

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Query:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG
        ++PP AK  + + +    + P + VEVE+IDIGE GN                                                        +++V+ G
Subjt:  MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNA-------------------------------------------------------DEEVEIG

Query:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD
        FDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALR QVNAEGREG  AAAALRAQVNA+GRD+QSSSSS+S S S SSSGS   SSDSEG+D
Subjt:  FDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQSSSSSTSGSASDSSSGS---SSDSEGSD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71080.1 RNA polymerase II transcription elongation factor

2.7e-04

38.46

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Query:  PEIPVEVERIDIGEAGNADEEVEIGFDINIP--------------HQ--------------ND----------------------TDDEIADV-DDSGDE
        P++PVEVERI+IG+  N+ E    G   N+P              HQ              ND                      T++EIADV DDSG E
Subjt:  PEIPVEVERIDIGEAGNADEEVEIGFDINIP--------------HQ--------------ND----------------------TDDEIADV-DDSGDE

Query:  AEKGPNAAEALRPQVNAEGREG-TNAAAALRAQVNAKGRDDQSSS-SSTSGSASDSSSGSSS-DSEGSD
         EKG NAAEALR QVNAE ++  T+++++     +    D +S S SS SGS   SSSGSSS  S GSD
Subjt:  AEKGPNAAEALRPQVNAEGREG-TNAAAALRAQVNAKGRDDQSSS-SSTSGSASDSSSGSSS-DSEGSD

AT5G38050.1 RNA polymerase II transcription elongation factor

1.1e-05

39.55

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Query:  EIPVEVERIDIGEAGNADEEVEI-------------------GFDINIPHQND-TDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQ
        E PV++  IDI    + +E+V I                     DIN+PH  +  DDEIA VD + DE+ KG NAAEALR QVNAE RE +  +++    
Subjt:  EIPVEVERIDIGEAGNADEEVEI-------------------GFDINIPHQND-TDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQ

Query:  VNAKGRDDQSSSSSTSGSASDSSSGSSSDSEGSD
         +  GR+ +SS S    S S SSS S S   GS+
Subjt:  VNAKGRDDQSSSSSTSGSASDSSSGSSSDSEGSD

Sequences

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CDS sequence

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ATGAATCCTCCAACAGCAAAAAGACGAAGGAAAATAGGGTTACAGAACAATCTTTGGCGGCCAGAAATTCCGGTAGAGGTGGAAAGAATAGATATTGGGGAGGCTGGAAA
TGCAGACGAAGAAGTTGAAATTGGATTCGATATAAATATACCGCATCAGAACGATACTGACGATGAGATTGCCGATGTGGATGATAGTGGCGACGAAGCTGAGAAGGGGC
CTAATGCTGCTGAAGCCCTCAGACCTCAAGTTAATGCAGAGGGAAGGGAAGGAACTAATGCTGCAGCAGCTCTCAGAGCTCAGGTTAATGCAAAGGGCAGGGACGACCAG
AGTTCGAGTTCTAGTACGAGCGGATCAGCCAGTGATAGCAGCAGCGGAAGTAGCAGTGACAGCGAAGGTAGCGATCGATGA

mRNA sequence

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Protein sequence

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MNPPTAKRRRKIGLQNNLWRPEIPVEVERIDIGEAGNADEEVEIGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRPQVNAEGREGTNAAAALRAQVNAKGRDDQ
SSSSSTSGSASDSSSGSSSDSEGSDR

Sed0022868 (gene) of Chayote v1 genome