; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0022879 (gene) of Chayote v1 genome

Gene IDSed0022879
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor PRE5-like
Genome locationLG08:34821887..34822226
RNA-Seq ExpressionSed0022879
SyntenySed0022879
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584448.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2472.5Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLIN
        MAS+ L DDQ++NL+  LQTLLP LNH+   S VS AEILKE CDYI+KLQREVDDLSERLW+Q+DSMG+DFEMVK L+N
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLIN

KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-2473.75Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLIN
        MAS+ L DDQ++NL+  LQTLLP LNH+   S VS AEILKE CDYI+KLQREVDDLSERLW+Q+DSMGVDFEMVK L+N
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLIN

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]1.9e-2371.08Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT
        MAS+KL D+++KNLV  L+TLLP LNH  DN S  S  EILKE CDYI+KLQ+EVDDLSERLW+Q+DSMGVDFEMVKDL+  T
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]7.7e-2573.49Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT
        MAS+KL DD++KNLV  LQTLLP LNH   N S VS  EILKE CDYI+KLQREVDDLSERLW+Q+DSMG+DFEMVKDL++ T
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]3.8e-2471.76Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDNS---PVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT
        MAS+KL+DD ++NLVF LQTLLPHLN   DN     VS  +ILKE CDYI+KLQREVDDLSERLW+Q+DSMGVD EMVKDLI L+
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDNS---PVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein3.7e-2573.49Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT
        MAS+KL DD++KNLV  LQTLLP LNH   N S VS  EILKE CDYI+KLQREVDDLSERLW+Q+DSMG+DFEMVKDL++ T
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT

A0A1S3B0J1 transcription factor PRE5-like9.2e-2471.08Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT
        MAS+KL D+++KNLV  L+TLLP LNH  DN S  S  EILKE CDYI+KLQ+EVDDLSERLW+Q+DSMGVDFEMVKDL+  T
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT

A0A5A7SZP9 Transcription factor PRE5-like9.2e-2471.08Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT
        MAS+KL D+++KNLV  L+TLLP LNH  DN S  S  EILKE CDYI+KLQ+EVDDLSERLW+Q+DSMGVDFEMVKDL+  T
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT

A0A5D3BKI2 Transcription factor PRE5-like4.3e-2172Show/hide
Query:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEM
        MAS+KL D+++KNLV  L+TLLP LNH  DN S  S  EILKE CDYI+KLQ+EVDDLSERLW+Q+DSMGVDFEM
Subjt:  MASTKLSDDQIKNLVFNLQTLLPHLNHSRDN-SPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEM

A0A5N5I0V3 Transcription factor PRE6-like2.8e-1253.75Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMG---VDFEMVKDLI
        ++K SDD+IK LV  LQ LLP L+HSR N+PVS + IL+E C YI++L REV+DLS+RL + +DS G   VD E+++ L+
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMG---VDFEMVKDLI

SwissProt top hitse value%identityAlignment
F4JCN9 Transcription factor PRE41.2e-0946.15Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDS
        ++ ++D+QI +LV  L  LLP L ++R +  VS + +L+E C YIR L +EVDDLSERL + ++S
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDS

Q8GW32 Transcription factor PRE62.5e-1043.21Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSER---LWRQVDSMGVDFEMVKDLIN
        S+++SDDQI +LV  LQ L+P L   R +  VS +++L+E C+YIR L REVDDLS+R   L    D    +  +++ L+N
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSER---LWRQVDSMGVDFEMVKDLIN

Q9CA64 Transcription factor PRE33.0e-1154.24Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERL
        ++++S+DQI +L+  LQ LLP L  SR +  VS A +L++ C+YIR L REVDDLSERL
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERL

Q9LJX1 Transcription factor PRE51.9e-1044.93Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVD
        ++++SDDQ+ +LV  L+  LP ++  R +  VS +++L+E C+YIRKL REVD+LS+RL + +DS+  D
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVD

Q9LXG5 Transcription factor PRE29.5e-1036.59Show/hide
Query:  ASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWR---QVDSMGVDFEMVKDLIN
        +S+++SDDQI +L+  L+  +P +  +R ++ VS +++L+E C+YIR L +E DDLS+RL +    +D       +++ LIN
Subjt:  ASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWR---QVDSMGVDFEMVKDLIN

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-1143.21Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSER---LWRQVDSMGVDFEMVKDLIN
        S+++SDDQI +LV  LQ L+P L   R +  VS +++L+E C+YIR L REVDDLS+R   L    D    +  +++ L+N
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSER---LWRQVDSMGVDFEMVKDLIN

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.1e-1254.24Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERL
        ++++S+DQI +L+  LQ LLP L  SR +  VS A +L++ C+YIR L REVDDLSERL
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-1144.93Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVD
        ++++SDDQ+ +LV  L+  LP ++  R +  VS +++L+E C+YIRKL REVD+LS+RL + +DS+  D
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVD

AT3G47710.1 BANQUO 38.8e-1146.15Show/hide
Query:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDS
        ++ ++D+QI +LV  L  LLP L ++R +  VS + +L+E C YIR L +EVDDLSERL + ++S
Subjt:  STKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDS

AT5G15160.1 BANQUO 26.8e-1136.59Show/hide
Query:  ASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWR---QVDSMGVDFEMVKDLIN
        +S+++SDDQI +L+  L+  +P +  +R ++ VS +++L+E C+YIR L +E DDLS+RL +    +D       +++ LIN
Subjt:  ASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWR---QVDSMGVDFEMVKDLIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACAAAATTAAGCGACGACCAGATTAAAAATCTTGTCTTCAATTTGCAAACCTTGCTCCCTCACCTCAACCATAGCCGCGACAATTCCCCGGTATCGGAGGC
GGAGATTTTGAAGGAGGCGTGTGATTATATAAGGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAGGCAGGTGGATTCAATGGGCGTTGATTTTGAGA
TGGTTAAGGATCTTATTAATCTCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACAAAATTAAGCGACGACCAGATTAAAAATCTTGTCTTCAATTTGCAAACCTTGCTCCCTCACCTCAACCATAGCCGCGACAATTCCCCGGTATCGGAGGC
GGAGATTTTGAAGGAGGCGTGTGATTATATAAGGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAGGCAGGTGGATTCAATGGGCGTTGATTTTGAGA
TGGTTAAGGATCTTATTAATCTCACTTAG
Protein sequenceShow/hide protein sequence
MASTKLSDDQIKNLVFNLQTLLPHLNHSRDNSPVSEAEILKEACDYIRKLQREVDDLSERLWRQVDSMGVDFEMVKDLINLT