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Sed0022884 (gene) of Chayote v1 genome

Gene IDSed0022884
OrganismSechium edule (Chayote v1)
DescriptionTPR_REGION domain-containing protein
Genome locationLG09:24455817..24457924
RNA-Seq ExpressionSed0022884
SyntenySed0022884
Gene Ontology termsGO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071554 - cell wall organization or biogenesis (biological process)
GO:0071840 - cellular component organization or biogenesis (biological process)
GO:0016020 - membrane (cellular component)
GO:0016759 - cellulose synthase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039891.1 TPR_11 domain-containing protein [Cucumis melo var. makuwa]4.9e-3552.14Show/hide
Query:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE
        MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   SDHHR  A   FRRTNSEGNLNT+SHA         P S +
Subjt:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE

Query:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM
          +F S       L+RS LQ+IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW+RV +G            EM
Subjt:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM

Query:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGG
        YLARG+GIG    G G  GGG R  S G GGGGG
Subjt:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGG

KGN46380.2 hypothetical protein Csa_005429 [Cucumis sativus]6.4e-3553.85Show/hide
Query:  MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSF
        MLL+SSSTPLLGSLLPPD       GK SPS+F FHCN        T +S +++   SDHHR +A   FRRTNSEGNLNT+SHA D +    +  SFDS 
Subjt:  MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSF

Query:  ISKPNH-----LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEMYLA
          K +      L+RS LQ+IPSFSFYGSR   EEEEEE+D + D  E+ED  G F I    ++AI+TPEVRAMEQAW+RV +G            EMYLA
Subjt:  ISKPNH-----LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEMYLA

Query:  RGIGIGTG
        RG+GIG G
Subjt:  RGIGIGTG

XP_004140576.2 uncharacterized protein LOC101206684 [Cucumis sativus]3.4e-3653.19Show/hide
Query:  MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSF
        MLL+SSSTPLLGSLLPPD       GK SPS+F FHCN        T +S +++   SDHHR +A   FRRTNSEGNLNT+SHA D +    +  SFDS 
Subjt:  MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSF

Query:  ISKPNH-----LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEMYLA
          K +      L+RS LQ+IPSFSFYGSR   EEEEEE+D + D  E+ED  G F I    ++AI+TPEVRAMEQAW+RV +G            EMYLA
Subjt:  ISKPNH-----LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEMYLA

Query:  RGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ
        RG+GIG    G G  GGG R    G GGGGGGG++
Subjt:  RGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ

XP_008459965.1 PREDICTED: uncharacterized protein LOC103498923 [Cucumis melo]1.1e-3451.68Show/hide
Query:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE
        MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   SDHHR  A   FRRTNSEGNLNT+SHA         P S +
Subjt:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE

Query:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM
          +F S       L+RS LQ+IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW+RV +G            EM
Subjt:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM

Query:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ
        YLARG+GIG G  G GG GG    G    GGGGGGG++
Subjt:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ

XP_038874351.1 uncharacterized protein LOC120067050 isoform X2 [Benincasa hispida]1.9e-3151.8Show/hide
Query:  MLLRSSSTPLLGSLLPPD--------PVGKPSPSSFTFHCN--TVSSPAAASLHS--DHHRPSAAFRRTNSEGNLNTLSHAPDSV----EDSSFDSFISK
        MLL+SSSTPLL SLLPPD            PSP  F FHCN  T+S    ASL+S          FRRT+SEGNLNTLSHAPD +    +  SFDSF  K
Subjt:  MLLRSSSTPLLGSLLPPD--------PVGKPSPSSFTFHCN--TVSSPAAASLHS--DHHRPSAAFRRTNSEGNLNTLSHAPDSV----EDSSFDSFISK

Query:  PNH---LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGM--ESAILTPEVRAMEQAWTRVA-----SGNEMYLARGIGIGTGL
        P++   L+RS LQ+IPSFSFY SR   EE++++DD   D +EDED  G F I+N M  ++AI+TPEV+AME AWT        S  EMYL   +GIG   
Subjt:  PNH---LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGM--ESAILTPEVRAMEQAWTRVA-----SGNEMYLARGIGIGTGL

Query:  AGAGGSGGGRRPGSSGSGGGGG
         G G  GGG R  S G GGGGG
Subjt:  AGAGGSGGGRRPGSSGSGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KA70 TPR_REGION domain-containing protein1.7e-3653.19Show/hide
Query:  MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSF
        MLL+SSSTPLLGSLLPPD       GK SPS+F FHCN        T +S +++   SDHHR +A   FRRTNSEGNLNT+SHA D +    +  SFDS 
Subjt:  MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSF

Query:  ISKPNH-----LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEMYLA
          K +      L+RS LQ+IPSFSFYGSR   EEEEEE+D + D  E+ED  G F I    ++AI+TPEVRAMEQAW+RV +G            EMYLA
Subjt:  ISKPNH-----LRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEMYLA

Query:  RGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ
        RG+GIG    G G  GGG R    G GGGGGGG++
Subjt:  RGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ

A0A1S3CCM7 uncharacterized protein LOC1034989235.3e-3551.68Show/hide
Query:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE
        MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   SDHHR  A   FRRTNSEGNLNT+SHA         P S +
Subjt:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE

Query:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM
          +F S       L+RS LQ+IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW+RV +G            EM
Subjt:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM

Query:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ
        YLARG+GIG G  G GG GG    G    GGGGGGG++
Subjt:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ

A0A2N9IKE4 TPR_REGION domain-containing protein1.3e-1237.71Show/hide
Query:  MLLRSSSTPLLGSLLPPDPVGKPSPSSFTFHCNTVSSPAAASLHSDHHR---------------PSAA-------FRRTNSEGNLNTLSHAPDSVEDSSF
        MLLRSSSTP+LGSLLP      P+ +   +  NT+      ++H +H+R               PS A       FRR  SEGNL  L++A     +SS 
Subjt:  MLLRSSSTPLLGSLLPPDPVGKPSPSSFTFHCNTVSSPAAASLHSDHHR---------------PSAA-------FRRTNSEGNLNTLSHAPDSVEDSSF

Query:  DSFISKPNHLRRSP----LQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE---------GCFHIKNGMESAILTPEVRAMEQAWTRVASGNEMYLAR
        D +I KP+     P    LQ+IPSFSFY  +G +E+ EEE++ D ++D++  E             ++N M + ILT EV   +  W  +    E +LAR
Subjt:  DSFISKPNHLRRSP----LQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE---------GCFHIKNGMESAILTPEVRAMEQAWTRVASGNEMYLAR

Query:  GIGIGTGLAGAGGSGGGRRPGSSG---SGGGGGGGD
        G+GIG+G    GGSGGG   GS G   S G GG G+
Subjt:  GIGIGTGLAGAGGSGGGRRPGSSG---SGGGGGGGD

A0A5A7TE10 TPR_11 domain-containing protein2.4e-3552.14Show/hide
Query:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE
        MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   SDHHR  A   FRRTNSEGNLNT+SHA         P S +
Subjt:  MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHSDHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVE

Query:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM
          +F S       L+RS LQ+IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW+RV +G            EM
Subjt:  DSSFDSFISKPNHLRRSPLQSIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRVASG-----------NEM

Query:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGG
        YLARG+GIG    G G  GGG R  S G GGGGG
Subjt:  YLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGG

A0A7N2MKH3 TPR_REGION domain-containing protein6.3e-1235.63Show/hide
Query:  MLLRSSSTPLLGSLL------------------------PPDPVGKPSPSSFTFHCNTVSSPAAASLHSDHHRPSAA-------FRRTNSEGNLNTLSHA
        MLLRSSSTP+LGSLL                        PP  + +   + F+ H     + +  S +S    PS A       FRR  S+GNL  L++A
Subjt:  MLLRSSSTPLLGSLL------------------------PPDPVGKPSPSSFTFHCNTVSSPAAASLHSDHHRPSAA-------FRRTNSEGNLNTLSHA

Query:  PDSV-EDSSFDSFISKPNHLRR--SPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE---------GCFHIKNGMESAILTPEVRAMEQAWT----
          S  ED   ++ + K    R   + LQ+I SFSFY S+G  E+EE+E++ D ++D++E+              ++N M S ILT EV   +Q W     
Subjt:  PDSV-EDSSFDSFISKPNHLRR--SPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE---------GCFHIKNGMESAILTPEVRAMEQAWT----

Query:  --RVASGNEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGD
          +   G  M+LARGIGIG    GA G GGG   G+ G G GGG GD
Subjt:  --RVASGNEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCTGAGGAGTTCTTCAACGCCGCTCCTAGGCTCTCTCCTCCCACCGGACCCCGTCGGAAAACCCTCCCCCTCCTCCTTCACTTTCCACTGCAACACCGTCTCCTC
CCCCGCTGCCGCTTCTCTCCACTCCGACCACCACCGCCCCTCCGCTGCCTTTCGTAGAACCAACTCCGAAGGAAACCTTAATACCCTCTCCCATGCTCCTGATTCTGTGG
AGGACTCCTCCTTTGATTCCTTCATTTCCAAGCCTAATCACCTCCGCCGCTCCCCTCTCCAATCCATTCCCTCGTTTTCGTTTTACGGTTCTAGAGGCACGGTTGAAGAA
GAAGAAGAAGAAGATGATCATGATCATGATGAAGACGAGGACGAGGACGAGGGATGCTTTCACATCAAGAACGGGATGGAGAGTGCGATTCTGACTCCGGAGGTTAGAGC
TATGGAACAAGCTTGGACTAGAGTCGCTTCTGGCAATGAGATGTATCTGGCGAGAGGGATTGGAATTGGAACTGGACTCGCTGGAGCAGGTGGTAGTGGTGGTGGTCGTC
GTCCAGGCTCGAGTGGCAGTGGCGGCGGTGGAGGAGGGGGTGACCAACTATGCAGAATTCTTGTACCAGTGGAAAGGAGATCTGGTTGGAGCAGAAGAGTATTACAGCAG
GGCCATTTTGATGGATTCAAAACATGGAAAAGTTTTGTCAAAATATGCAAAGTTAGTGTGGGAATTGTACCATGA
mRNA sequenceShow/hide mRNA sequence
ATACAATGAAAAGAAAAAAAGTTGTGTGATGTACATCCACAGCTCATCAACTACCTTCACCTTCCTTCATCTTCAACCATACAAAATACATATTATAATTTTATATACCA
ACTCCCTTCATCTCTCCCTCTTTACAAAAATCTTCTTCTTCCTCTATGCTGCTGAGGAGTTCTTCAACGCCGCTCCTAGGCTCTCTCCTCCCACCGGACCCCGTCGGAAA
ACCCTCCCCCTCCTCCTTCACTTTCCACTGCAACACCGTCTCCTCCCCCGCTGCCGCTTCTCTCCACTCCGACCACCACCGCCCCTCCGCTGCCTTTCGTAGAACCAACT
CCGAAGGAAACCTTAATACCCTCTCCCATGCTCCTGATTCTGTGGAGGACTCCTCCTTTGATTCCTTCATTTCCAAGCCTAATCACCTCCGCCGCTCCCCTCTCCAATCC
ATTCCCTCGTTTTCGTTTTACGGTTCTAGAGGCACGGTTGAAGAAGAAGAAGAAGAAGATGATCATGATCATGATGAAGACGAGGACGAGGACGAGGGATGCTTTCACAT
CAAGAACGGGATGGAGAGTGCGATTCTGACTCCGGAGGTTAGAGCTATGGAACAAGCTTGGACTAGAGTCGCTTCTGGCAATGAGATGTATCTGGCGAGAGGGATTGGAA
TTGGAACTGGACTCGCTGGAGCAGGTGGTAGTGGTGGTGGTCGTCGTCCAGGCTCGAGTGGCAGTGGCGGCGGTGGAGGAGGGGGTGACCAACTATGCAGAATTCTTGTA
CCAGTGGAAAGGAGATCTGGTTGGAGCAGAAGAGTATTACAGCAGGGCCATTTTGATGGATTCAAAACATGGAAAAGTTTTGTCAAAATATGCAAAGTTAGTGTGGGAAT
TGTACCATGATCAACTAAAAGCCTCTTCTTACTTCCAACTCGCTATACAAGCTTCTCCACATGACAGCCATGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAATAGAA
GACGACGAGGAGGAGGACGACGACATAGTAAAAGAGATGGTGACACAAACTGGCAGGGCAGCTGCAACTGCTTGAGATGAAAGAGAATACCTTAAGCCATTTGCAGAATA
ATCTCCTCCTCACTCATAATAAAAAATAATTCTATCATGTTCAAAATTAATCCATGTCTGTAATACAATGAAAGTGAAGAAATGAACAAGAAAAACATAGGTAGGATAAG
GCATAACCAAACAAGTTTATTTTAAGATTATTGAAAAAGGACCATCTTCTATGTCTTTCTCAAAGCATTCCTAAC
Protein sequenceShow/hide protein sequence
MLLRSSSTPLLGSLLPPDPVGKPSPSSFTFHCNTVSSPAAASLHSDHHRPSAAFRRTNSEGNLNTLSHAPDSVEDSSFDSFISKPNHLRRSPLQSIPSFSFYGSRGTVEE
EEEEDDHDHDEDEDEDEGCFHIKNGMESAILTPEVRAMEQAWTRVASGNEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQLCRILVPVERRSGWSRRVLQQ
GHFDGFKTWKSFVKICKVSVGIVP