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Sed0022912 (gene) of Chayote v1 genome

Gene IDSed0022912
OrganismSechium edule (Chayote v1)
DescriptionTryptophanyl-tRNA synthetase
Genome locationLG04:2082038..2082978
RNA-Seq ExpressionSed0022912
SyntenySed0022912
Gene Ontology termsGO:0006418 - tRNA aminoacylation for protein translation (biological process)
GO:0000166 - nucleotide binding (molecular function)
GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
InterPro domainsIPR014729 - Rossmann-like alpha/beta/alpha sandwich fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONK62325.1 uncharacterized protein A4U43_C07F2730 [Asparagus officinalis]1.3e-1934.59Show/hide
Query:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------
        +E KVE +++QVVNPW+V+AKDGGKIDYDKL++KFGCQRL+ ++V+                                                      
Subjt:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------

Query:  ----------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                                                       +AVPSFP+SFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  ----------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

ONK62910.1 uncharacterized protein A4U43_C07F9390 [Asparagus officinalis]5.6e-1832.47Show/hide
Query:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------
        +E KV+ +++QVVNPW+V+AKDGGKIDYDKL++KFGCQRL+ ++V+                                                      
Subjt:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------

Query:  -------------------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                                                                +AVPSFP+SFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  -------------------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

PIA46647.1 hypothetical protein AQUCO_01500294v1 [Aquilegia coerulea]8.0e-1738Show/hide
Query:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------------
        ++++QVV PW+V A  GGKIDYDKLI KFGCQ+L  +++                                                             
Subjt:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------------

Query:  -----------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                   P AVPSFP+SFPHLFS +DN RCLIPCAIDQDPYFRMTR
Subjt:  -----------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

XP_022860898.1 tryptophan--tRNA ligase, cytoplasmic-like [Olea europaea var. sylvestris]7.5e-2348.06Show/hide
Query:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE--------------------------------------------PRAVPSFPSS
        ME + +E+++Q+V  W+VSA+ GGKIDYDKLIDKFGCQRLD S+V                                              +A PSFPSS
Subjt:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE--------------------------------------------PRAVPSFPSS

Query:  FPHLFSSKDNPRCLIPCAIDQDPYFRMTR
        FPHLFS KD+  CLIPCAIDQDPYFRMTR
Subjt:  FPHLFSSKDNPRCLIPCAIDQDPYFRMTR

XP_038990386.1 tryptophan--tRNA ligase, cytoplasmic-like isoform X2 [Phoenix dactylifera]2.3e-1935.87Show/hide
Query:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------
        +R+V E+++QVVNPW+V+AKDGGKIDYDKLI+KFGCQRLD S+V+                                                       
Subjt:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------

Query:  ---------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                                                      +AVPSFPSSFPHLF  KD  RCLIPCAIDQDPYFRMTR
Subjt:  ---------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

TrEMBL top hitse value%identityAlignment
A0A2G5DTR4 Tryptophanyl-tRNA synthetase3.9e-1738Show/hide
Query:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------------
        ++++QVV PW+V A  GGKIDYDKLI KFGCQ+L  +++                                                             
Subjt:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------------

Query:  -----------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                   P AVPSFP+SFPHLFS +DN RCLIPCAIDQDPYFRMTR
Subjt:  -----------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

A0A2N9J8C3 zf-RVT domain-containing protein1.1e-1935.33Show/hide
Query:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------
        E + E++ +QVVNPW+VSAK+GGKIDYDKLIDKFGCQRLD S+++                                                       
Subjt:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------

Query:  ---------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                                                      +A PSFP+SFPHLFS KDN RCLIPCAIDQDPYFRMTR
Subjt:  ---------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

A0A4S8J2J2 Tryptophanyl-tRNA synthetase1.5e-1632.18Show/hide
Query:  EEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-----------------------------------------------------------
        E D++QVVNPW+V+AKDGGKIDYDKLI+KFGCQRL+  +V                                                            
Subjt:  EEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-----------------------------------------------------------

Query:  ---------------------------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRM
                                                                        +AVPSFPSSFPHLFS KDN RCLIPCAIDQDPYFRM
Subjt:  ---------------------------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRM

Query:  TR
        TR
Subjt:  TR

A0A5P1E8V0 Tryptophanyl-tRNA synthetase6.4e-2034.59Show/hide
Query:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------
        +E KVE +++QVVNPW+V+AKDGGKIDYDKL++KFGCQRL+ ++V+                                                      
Subjt:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------

Query:  ----------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                                                       +AVPSFP+SFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  ----------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

A0A5P1EFR0 Tryptophanyl-tRNA synthetase2.7e-1832.47Show/hide
Query:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------
        +E KV+ +++QVVNPW+V+AKDGGKIDYDKL++KFGCQRL+ ++V+                                                      
Subjt:  MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE------------------------------------------------------

Query:  -------------------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                                                                +AVPSFP+SFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  -------------------------------------------------------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

SwissProt top hitse value%identityAlignment
P17248 Tryptophan--tRNA ligase, cytoplasmic3.7e-0965.79Show/hide
Query:  RAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
        +A PSF +SFP +F  + + +CLIPCAIDQDPYFRMTR
Subjt:  RAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

P17248 Tryptophan--tRNA ligase, cytoplasmic3.1e-0330.49Show/hide
Query:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE--PRAVPSFPSSFPH--LFSSKDNPRCLIPCAIDQDPYFRMT
        E D+  V+PW V       IDYDKLI +FG  ++D  +V    RA    P  F    +F S  +   ++    ++ P++  T
Subjt:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE--PRAVPSFPSSFPH--LFSSKDNPRCLIPCAIDQDPYFRMT

P23381 Tryptophan--tRNA ligase, cytoplasmic4.9e-0965.79Show/hide
Query:  RAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
        +A PSF +SFP +F  + + +CLIPCAIDQDPYFRMTR
Subjt:  RAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

Q09692 Tryptophan--tRNA ligase, cytoplasmic1.7e-0968.42Show/hide
Query:  RAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
        +A PSF SSFPH+F+   +  CLIPCAIDQDPYFR+TR
Subjt:  RAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

Q55DZ8 Tryptophan--tRNA ligase, cytoplasmic7.6e-1069.05Show/hide
Query:  RAVPSFPSSFPHLFSSKD----NPRCLIPCAIDQDPYFRMTR
        +A P FP SFPH+F   D    N RCLIPCAIDQDPYFRMTR
Subjt:  RAVPSFPSSFPHLFSSKD----NPRCLIPCAIDQDPYFRMTR

Q55DZ8 Tryptophan--tRNA ligase, cytoplasmic1.4e-0341.03Show/hide
Query:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIV
        E  +QV+ PW+V A  GG +DY KL+D+FG   +   ++
Subjt:  EDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIV

Q9SR15 Tryptophan--tRNA ligase, cytoplasmic4.6e-1526.83Show/hide
Query:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------
        + +  E  +QVVNPW+VSAKDGGKIDYDKLIDKFGCQRLD S+++                                                       
Subjt:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                +AVPSFPSSFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

Arabidopsis top hitse value%identityAlignment
AT3G04600.1 Nucleotidylyl transferase superfamily protein3.2e-1626.83Show/hide
Query:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------
        + +  E  +QVVNPW+VSAKDGGKIDYDKLIDKFGCQRLD S+++                                                       
Subjt:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                +AVPSFPSSFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

AT3G04600.2 Nucleotidylyl transferase superfamily protein3.2e-1626.83Show/hide
Query:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------
        + +  E  +QVVNPW+VSAKDGGKIDYDKLIDKFGCQRLD S+++                                                       
Subjt:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                +AVPSFPSSFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR

AT3G04600.3 Nucleotidylyl transferase superfamily protein3.2e-1626.83Show/hide
Query:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------
        + +  E  +QVVNPW+VSAKDGGKIDYDKLIDKFGCQRLD S+++                                                       
Subjt:  ERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVE-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR
                +AVPSFPSSFPHLF  KDN RCLIPCAIDQDPYFRMTR
Subjt:  -------PRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGAAAGGTTGAAGAAGACGACGACCAAGTTGTAAATCCATGGCAAGTTTCGGCTAAAGATGGAGGCAAAATCGACTACGACAAGCTAATCGACAAGTTCGGCTG
TCAGAGGCTCGACCACTCCATCGTCGAGCCTCGGGCAGTTCCTTCATTTCCGAGTTCATTTCCACACCTTTTCTCTAGTAAGGATAATCCTCGGTGCTTAATACCTTGTG
CTATTGATCAGGATCCTTATTTTCGAATGACAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGAAAGGTTGAAGAAGACGACGACCAAGTTGTAAATCCATGGCAAGTTTCGGCTAAAGATGGAGGCAAAATCGACTACGACAAGCTAATCGACAAGTTCGGCTG
TCAGAGGCTCGACCACTCCATCGTCGAGCCTCGGGCAGTTCCTTCATTTCCGAGTTCATTTCCACACCTTTTCTCTAGTAAGGATAATCCTCGGTGCTTAATACCTTGTG
CTATTGATCAGGATCCTTATTTTCGAATGACAAGGTAA
Protein sequenceShow/hide protein sequence
MERKVEEDDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDHSIVEPRAVPSFPSSFPHLFSSKDNPRCLIPCAIDQDPYFRMTR