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Sed0022928 (gene) of Chayote v1 genome

Gene IDSed0022928
OrganismSechium edule (Chayote v1)
DescriptionF-box domain-containing protein
Genome locationLG10:32494166..32497060
RNA-Seq ExpressionSed0022928
SyntenySed0022928
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY20083.1 F-box/RNI-like superfamily protein [Theobroma cacao]8.9e-0834.88Show/hide
Query:  VDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLT
        V+IC PRL   K+ G  P+VC  E L  L   ++  D   Y      E+ ++   L  T   F  A S+T+S    ++L+ FP +LD     F NLKHL 
Subjt:  VDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLT

Query:  LK-KEAKSTTMEIPMNVVACLLQRSPSLK
        +K K+ +S   E+P  ++ C L  S  LK
Subjt:  LK-KEAKSTTMEIPMNVVACLLQRSPSLK

KAF5942349.1 hypothetical protein HYC85_019991 [Camellia sinensis]2.0e-0736.51Show/hide
Query:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL
        + + I  PRL   KFEG    V SL    CL  V + + PMFY      +V++RM   N+   LG      SIT+SL   EVL+  P  L      F  L
Subjt:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL

Query:  KHLTLKKEAKSTTMEIPMNVVACLLQ
        KHL L +   S+++ +P+NV+  L Q
Subjt:  KHLTLKKEAKSTTMEIPMNVVACLLQ

KAF5942350.1 hypothetical protein HYC85_019992 [Camellia sinensis]2.0e-0735.71Show/hide
Query:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL
        + + I  PRL   KFEG    V S     CL  V + + PMFY      +V++RM   N+   LG    A S+T+SL   EVL+  P  L    + F  L
Subjt:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL

Query:  KHLTLKKEAKSTTMEIPMNVVACLLQ
        KHL L +   S+++ +P+NV+  L Q
Subjt:  KHLTLKKEAKSTTMEIPMNVVACLLQ

XP_017984420.1 PREDICTED: F-box/LRR-repeat protein At3g26922 [Theobroma cacao]6.8e-0834.88Show/hide
Query:  VDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLT
        V+IC PRL   K+ G  P+VC  E L  L   ++  D   Y      E+ ++   L  T   F  A S+T+S    ++L+ FP +LD     F NLKHL 
Subjt:  VDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLT

Query:  LK-KEAKSTTMEIPMNVVACLLQRSPSLK
        +K K+ +S   E+P  ++ C L  S  LK
Subjt:  LK-KEAKSTTMEIPMNVVACLLQRSPSLK

XP_028053057.1 F-box/LRR-repeat protein At3g26922-like isoform X1 [Camellia sinensis]2.0e-0735.71Show/hide
Query:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL
        + + I  PRL   KFEG    V S     CL  V + + PMFY      +V++RM   N+   LG    A S+T+SL   EVL+  P  L    + F  L
Subjt:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL

Query:  KHLTLKKEAKSTTMEIPMNVVACLLQ
        KHL L +   S+++ +P+NV+  L Q
Subjt:  KHLTLKKEAKSTTMEIPMNVVACLLQ

TrEMBL top hitse value%identityAlignment
A0A061FSZ8 F-box/RNI-like superfamily protein4.3e-0834.88Show/hide
Query:  VDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLT
        V+IC PRL   K+ G  P+VC  E L  L   ++  D   Y      E+ ++   L  T   F  A S+T+S    ++L+ FP +LD     F NLKHL 
Subjt:  VDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLT

Query:  LK-KEAKSTTMEIPMNVVACLLQRSPSLK
        +K K+ +S   E+P  ++ C L  S  LK
Subjt:  LK-KEAKSTTMEIPMNVVACLLQRSPSLK

A0A067KAJ7 F-box domain-containing protein8.1e-0737.21Show/hide
Query:  ICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLTLK
        I  P+L   KF     VV S+  L  L +V+   D +F  + D  +      NL   L  FH A SIT+S   FEVLS FP  L++  + F NLK+L L 
Subjt:  ICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHLTLK

Query:  KEAKSTTMEIPMNVVACLLQRSPSLKTIL
        +  +   + +P  V+A  L+ SPSLK  L
Subjt:  KEAKSTTMEIPMNVVACLLQRSPSLKTIL

A0A4S4EXY4 Uncharacterized protein9.6e-0835.71Show/hide
Query:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL
        + + I  PRL   KFEG    V S     CL  V + + PMFY      +V++RM   N+   LG    A S+T+SL   EVL+  P  L    + F  L
Subjt:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL

Query:  KHLTLKKEAKSTTMEIPMNVVACLLQ
        KHL L +   S+++ +P+NV+  L Q
Subjt:  KHLTLKKEAKSTTMEIPMNVVACLLQ

A0A7J7GNI7 Uncharacterized protein9.6e-0836.51Show/hide
Query:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL
        + + I  PRL   KFEG    V SL    CL  V + + PMFY      +V++RM   N+   LG      SIT+SL   EVL+  P  L      F  L
Subjt:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL

Query:  KHLTLKKEAKSTTMEIPMNVVACLLQ
        KHL L +   S+++ +P+NV+  L Q
Subjt:  KHLTLKKEAKSTTMEIPMNVVACLLQ

A0A7J7GNT7 Uncharacterized protein9.6e-0835.71Show/hide
Query:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL
        + + I  PRL   KFEG    V S     CL  V + + PMFY      +V++RM   N+   LG    A S+T+SL   EVL+  P  L    + F  L
Subjt:  ASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGD--GDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNL

Query:  KHLTLKKEAKSTTMEIPMNVVACLLQ
        KHL L +   S+++ +P+NV+  L Q
Subjt:  KHLTLKKEAKSTTMEIPMNVVACLLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGGACGGGCAGTTTTCGTCGGGTGCTTCGGTCGATATCTGCACGCCGAGGCTTGGGTTTGTGAAGTTTGAAGGGAGTGTGCCTGTTGTGTGTTCTTTGGAGAAGCT
TGGTTGTTTGGTGAAAGTGGAAATACTAATTGATCCAATGTTTTATGGGGATGGTGATCTTGTTGAGCAGAGAATGTTGGCTCAAAATCTTGCTACAACTCTTGGTGTTT
TTCATGGTGCTAACTCAATTACAATTTCTTTGGTGGCTTTTGAGGTTCTCTCCAACTTTCCCAAGGTTTTAGATGATGAGACAAATCTGTTCTGTAACTTGAAGCATTTG
ACATTGAAGAAAGAAGCTAAATCCACAACCATGGAAATTCCAATGAATGTGGTAGCCTGCTTGCTTCAGAGATCTCCCTCTCTAAAAACCATTTTGGTGGAACTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGGACGGGCAGTTTTCGTCGGGTGCTTCGGTCGATATCTGCACGCCGAGGCTTGGGTTTGTGAAGTTTGAAGGGAGTGTGCCTGTTGTGTGTTCTTTGGAGAAGCT
TGGTTGTTTGGTGAAAGTGGAAATACTAATTGATCCAATGTTTTATGGGGATGGTGATCTTGTTGAGCAGAGAATGTTGGCTCAAAATCTTGCTACAACTCTTGGTGTTT
TTCATGGTGCTAACTCAATTACAATTTCTTTGGTGGCTTTTGAGGTTCTCTCCAACTTTCCCAAGGTTTTAGATGATGAGACAAATCTGTTCTGTAACTTGAAGCATTTG
ACATTGAAGAAAGAAGCTAAATCCACAACCATGGAAATTCCAATGAATGTGGTAGCCTGCTTGCTTCAGAGATCTCCCTCTCTAAAAACCATTTTGGTGGAACTCTAA
Protein sequenceShow/hide protein sequence
MRDGQFSSGASVDICTPRLGFVKFEGSVPVVCSLEKLGCLVKVEILIDPMFYGDGDLVEQRMLAQNLATTLGVFHGANSITISLVAFEVLSNFPKVLDDETNLFCNLKHL
TLKKEAKSTTMEIPMNVVACLLQRSPSLKTILVEL