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Sed0022961 (gene) of Chayote v1 genome

Gene IDSed0022961
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG08:39623698..39624198
RNA-Seq ExpressionSed0022961
SyntenySed0022961
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043344.1 hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa]1.8e-5265.68Show/hide
Query:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEE
        MI  + K+ SFT+FL S+PSPFPSL L++LIFTFH+P CRFFSY     LP  YYNC G+ K LC PI  S P+ L  GGWALRAAPIALLV VSWL+++
Subjt:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEE

Query:  DSAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
        +SAG AA  WGS+GC V TIS H     KAE  E+GGCTPW+LVG+I+LLF+MAQRQALI+HCLFVRSM
Subjt:  DSAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
KAE8653331.1 hypothetical protein Csa_023242 [Cucumis sativus]2.1e-5368.05Show/hide
Query:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEE
        MI  + K+SSFTHFL S+PSPFPSL LL+LIFTFH+  CRFFSY    LLP  YYNC G+ K LC PI IS P+ L  GGWALRAAPIALLV VSWL+++
Subjt:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEE

Query:  DSAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
        +SAG AA  W S+G RV TIS H     KAE  E+GGCTPW+LVGMI+LLF+MAQRQALI+HCLFVRSM
Subjt:  DSAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
KAG6573437.1 hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia]8.5e-5568.48Show/hide
Query:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYFLLPRP--YYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEED
        MI  +PK+SS TH L S+PSPFPSL LL+LIFT H+PTCRFFSYFL   P  YY+CAG    LC P+A+S PK L CGGW+LR APIALLV VSWLTE+D
Subjt:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYFLLPRP--YYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEED

Query:  SAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFV
        + G AA NWGSR C VPTI    MR+ + EA  +GGCTPW+LVGMILLLF+MAQRQALI+HCLFV
Subjt:  SAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFV
TrEMBL top hitse value%identityAlignment
A0A0A0LW23 Uncharacterized protein2.9e-5369.33Show/hide
Query:  KISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGA
        K+SSFTHFL S+PSPFPSL LL+LIFTFH+  CRFFSY    LLP  YYNC G+ K LC PI IS P+ L  GGWALRAAPIALLV VSWL++++SAG A
Subjt:  KISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGA

Query:  AGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
        A  W S+G RV TIS H     KAE  E+GGCTPW+LVGMI+LLF+MAQRQALI+HCLFVRSM
Subjt:  AGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
A0A5A7TJ52 Uncharacterized protein8.6e-5365.68Show/hide
Query:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEE
        MI  + K+ SFT+FL S+PSPFPSL L++LIFTFH+P CRFFSY     LP  YYNC G+ K LC PI  S P+ L  GGWALRAAPIALLV VSWL+++
Subjt:  MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYF---LLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEE

Query:  DSAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
        +SAG AA  WGS+GC V TIS H     KAE  E+GGCTPW+LVG+I+LLF+MAQRQALI+HCLFVRSM
Subjt:  DSAGGAAGNWGSRGCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTCACAGTGCCTAAAATCTCTTCTTTTACACATTTTCTGAACTCTGAACCCTCACCCTTCCCTTCTCTTTTCCTACTTGTTCTCATCTTCACCTTCCATGTCCC
GACATGTCGTTTCTTCTCTTACTTCCTTCTTCCAAGGCCTTACTACAATTGTGCTGGCCATGGTAAGAGCCTCTGCTATCCCATTGCAATATCCCATCCCAAAGGATTGT
TTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATCGCCTTACTTGTGGCGGTGAGTTGGTTGACGGAGGAGGACTCGGCAGGAGGTGCTGCTGGGAACTGGGGGTCTAGA
GGCTGCCGTGTTCCGACCATTTCGGTGCACGGAATGAGGGAAAGCAAGGCAGAGGCTGGAGAAATGGGTGGCTGTACTCCTTGGATTCTAGTGGGAATGATTCTGCTCCT
ATTCAGTATGGCTCAACGCCAAGCTCTCATTCAGCATTGCTTGTTCGTTAGAAGTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTCACAGTGCCTAAAATCTCTTCTTTTACACATTTTCTGAACTCTGAACCCTCACCCTTCCCTTCTCTTTTCCTACTTGTTCTCATCTTCACCTTCCATGTCCC
GACATGTCGTTTCTTCTCTTACTTCCTTCTTCCAAGGCCTTACTACAATTGTGCTGGCCATGGTAAGAGCCTCTGCTATCCCATTGCAATATCCCATCCCAAAGGATTGT
TTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATCGCCTTACTTGTGGCGGTGAGTTGGTTGACGGAGGAGGACTCGGCAGGAGGTGCTGCTGGGAACTGGGGGTCTAGA
GGCTGCCGTGTTCCGACCATTTCGGTGCACGGAATGAGGGAAAGCAAGGCAGAGGCTGGAGAAATGGGTGGCTGTACTCCTTGGATTCTAGTGGGAATGATTCTGCTCCT
ATTCAGTATGGCTCAACGCCAAGCTCTCATTCAGCATTGCTTGTTCGTTAGAAGTATGTGA
Protein sequenceShow/hide protein sequence
MILTVPKISSFTHFLNSEPSPFPSLFLLVLIFTFHVPTCRFFSYFLLPRPYYNCAGHGKSLCYPIAISHPKGLFCGGWALRAAPIALLVAVSWLTEEDSAGGAAGNWGSR
GCRVPTISVHGMRESKAEAGEMGGCTPWILVGMILLLFSMAQRQALIQHCLFVRSM