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Sed0023001 (gene) of Chayote v1 genome

Gene IDSed0023001
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG12:5002294..5004430
RNA-Seq ExpressionSed0023001
SyntenySed0023001
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022945423.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]1.4e-5190.6Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN DSKRSNP P+MVK ESEDRKPSSAA   KKIVIKSADMFG+MQ+EAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022955505.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata]7.5e-5088.98Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSS--AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MN++SKRSNP P+MVK ESEDRK SS  AAAAKKIVIKSADMFG+MQ+EAVDIAIAAFEKHSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSS--AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

XP_022973755.1 dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]1.7e-4989.74Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN DSKRSNP  +MVK ESEDRKPSSAA   KKIVIKSADMFG+MQ+EAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022979977.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]2.6e-5090.6Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSS-AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN++SKRSNP P+MVK ESEDRK SS AAAAKKIVIKSADMFG MQ+EAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSS-AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023526495.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]2.2e-4988.14Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSS--AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MN++SKR NP P+MVK ESEDRK SS   AAAKKIVIKSADMFG+MQ+EAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSS--AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A6J1C8U0 Dynein light chain1.5e-4885.47Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSSA-AAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN+D+KR+NP  +MVK ESEDRKPSSA   A+K+VIKSADMFG+MQ+EAVDIAIAAFEK++VEKDVAEQIK+EFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSSA-AAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1G0U9 Dynein light chain6.6e-5290.6Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN DSKRSNP P+MVK ESEDRKPSSAA   KKIVIKSADMFG+MQ+EAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1GVA3 Dynein light chain3.6e-5088.98Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSS--AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MN++SKRSNP P+MVK ESEDRK SS  AAAAKKIVIKSADMFG+MQ+EAVDIAIAAFEKHSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSS--AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1IC60 Dynein light chain8.1e-5089.74Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN DSKRSNP  +MVK ESEDRKPSSAA   KKIVIKSADMFG+MQ+EAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSSAA-AAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1IQ69 Dynein light chain1.2e-5090.6Show/hide
Query:  MNRDSKRSNPGPIMVKFESEDRKPSS-AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN++SKRSNP P+MVK ESEDRK SS AAAAKKIVIKSADMFG MQ+EAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNRDSKRSNPGPIMVKFESEDRKPSS-AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
O96860 Dynein light chain 2, cytoplasmic3.1e-3070.93Show/hide
Query:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  EMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q22799 Dynein light chain 1, cytoplasmic4.0e-3068.6Show/hide
Query:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  +MQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q24117 Dynein light chain 1, cytoplasmic1.8e-3070.93Show/hide
Query:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  EMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q39580 Dynein 8 kDa light chain, flagellar outer arm6.2e-3168.89Show/hide
Query:  AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        A+ + K VIK+ADM  EMQ +AVD A  A EK+++EKD+A  IKKEFD++H PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  AAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic4.0e-3069.77Show/hide
Query:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  +MQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein2.1e-1342.86Show/hide
Query:  IKSADMFGEMQREAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  IKSADMFGEMQREAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 113.0e-1241.18Show/hide
Query:  KIVIKSADMFGEMQREAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM  +MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGEMQREAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT3G16120.1 Dynein light chain type 1 family protein1.9e-1140Show/hide
Query:  KIVIKSADMFGEMQREAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K  ++  DM  +MQ +A+ IA  + +   V     +A  IKKEFD+R+G  W C+VG NFG + TH    F+YF+L     L+FK
Subjt:  KIVIKSADMFGEMQREAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein4.1e-3868.38Show/hide
Query:  KRSNPGPIMVKFESEDRKPS------SAAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        K+S  G    +   +DR+ S      S  A K+ VIKSADM  +MQ+EA++IAI+AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNH
Subjt:  KRSNPGPIMVKFESEDRKPS------SAAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

AT5G20110.1 Dynein light chain type 1 family protein1.3e-1549.46Show/hide
Query:  SAAAAKKIVIKSADMFGEMQREAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        +AA    + I +ADM G MQ  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Subjt:  SAAAAKKIVIKSADMFGEMQREAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGCGACTCCAAGCGAAGCAATCCTGGACCGATAATGGTGAAGTTCGAATCCGAGGATCGGAAACCCTCATCTGCCGCCGCCGCCAAGAAAATCGTCATCAAGAG
CGCCGATATGTTCGGAGAAATGCAGAGGGAGGCTGTCGACATTGCCATCGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATCAAGAAGGAGTTCG
ATAAGCGCCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGCTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAAAAAGCAGTT
TTACTTTTCAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAATTTAAAGAAAAAGAAAAGGACAGGGTCTTGGGAATCTGTACAGAAGAAACGCAGAGTGATAGTGGCTGAGAGCGAAATCCCTTCTTCTTCTTCTTCTTCTTCTTC
CCAAAACCTCAACAACAAAACAACAATGAATCGCGACTCCAAGCGAAGCAATCCTGGACCGATAATGGTGAAGTTCGAATCCGAGGATCGGAAACCCTCATCTGCCGCCG
CCGCCAAGAAAATCGTCATCAAGAGCGCCGATATGTTCGGAGAAATGCAGAGGGAGGCTGTCGACATTGCCATCGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTC
GCCGAGCAGATCAAGAAGGAGTTCGATAAGCGCCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGCTCCTATGTGACACACGAGACAAACCATTTTGTTTA
CTTCTACCTGGATCAAAAAGCAGTTTTACTTTTCAAATCTGGTTGATGATTGTTGGCCCCTTGACAAAGATGCCTTCCAACCACTTTGGCAAGCCTGCCATAACGATGCT
ATGACAAGTTCTTGTATGTATAATCTAAGTCTGTTGCCCATTATGTAAATCACTGGGTGTAGTTTTCTTTATAATAACTAAATATATCACTGGGGAGTAAATTAAATGGT
GAAACAAGAAATTCAATGTGTCATTTACATAAATGTAGCATTTTCTATATAATAACCATCGGGCTTAGGAAAACTAAGAGGTGATGAGTTTAATCCATGAC
Protein sequenceShow/hide protein sequence
MNRDSKRSNPGPIMVKFESEDRKPSSAAAAKKIVIKSADMFGEMQREAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAV
LLFKSG