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Sed0023029 (gene) of Chayote v1 genome

Gene IDSed0023029
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 1
Genome locationLG11:33059038..33061136
RNA-Seq ExpressionSed0023029
SyntenySed0023029
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649911.1 hypothetical protein Csa_012510 [Cucumis sativus]6.7e-2759.85Show/hide
Query:  MPFRRT-----SLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYIPPPPPPEFYGGY-MTP---SSYSFWAPP
        MPF  T     S  LW++A  LFS  +S  Q+AVP+  QLCISDCSTCPV+CTA      PP    PP +YI PPPPP FYGG+ M P    SY  W  P
Subjt:  MPFRRT-----SLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYIPPPPPPEFYGGY-MTP---SSYSFWAPP

Query:  PPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
        PPPV  YF GARPSG+MP+T GP DYSYPYYYFYSSN
Subjt:  PPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN

KAG6608366.1 Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2660.74Show/hide
Query:  MPFRRTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFWAPPPP
        MPF  TSL LWV+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T           PR+Y    PPPPP FYGGYM P     SSY F   PPP
Subjt:  MPFRRTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFWAPPPP

Query:  PVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
        PV  Y SGA+PSGQMP+T GP DYSYPYYYFYSSN
Subjt:  PVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN

XP_022940707.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]2.8e-2557.86Show/hide
Query:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFW
        MPF+      TSL LWV+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T           PR+Y    PPPPP FYGGYM P     SSY F 
Subjt:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFW

Query:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
          P PPV  Y SGA+PSGQMP+T GP DYSYPYYYFYSSN
Subjt:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN

XP_022981722.1 leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]8.7e-2760Show/hide
Query:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYI--PPPPPPEFYGGYMTP-----SSYSFW
        MPF+      TSL L V+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T T  P +  S    YI  PPPPPP FYGGYM P     SSY F+
Subjt:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYI--PPPPPPEFYGGYMTP-----SSYSFW

Query:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
          PPPPV  Y SGA+PSGQMP+T GP DYSYPYYYFYSSN
Subjt:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN

XP_023523402.1 leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]3.4e-2359.2Show/hide
Query:  LAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY----IPPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGAR
        +A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T           PR+Y     PPPPPP FYGGYM P     SSY F   PPPPV  Y SGA+
Subjt:  LAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY----IPPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGAR

Query:  PSGQMPRTAGPGDYSYPYYYFYSSN
        PSGQMP+T GP DYSYPYYYFYSSN
Subjt:  PSGQMPRTAGPGDYSYPYYYFYSSN

TrEMBL top hitse value%identityAlignment
A0A0A0L054 Microtubule associated protein (Ase1)3.2e-2759.85Show/hide
Query:  MPFRRT-----SLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYIPPPPPPEFYGGY-MTP---SSYSFWAPP
        MPF  T     S  LW++A  LFS  +S  Q+AVP+  QLCISDCSTCPV+CTA      PP    PP +YI PPPPP FYGG+ M P    SY  W  P
Subjt:  MPFRRT-----SLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYIPPPPPPEFYGGY-MTP---SSYSFWAPP

Query:  PPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
        PPPV  YF GARPSG+MP+T GP DYSYPYYYFYSSN
Subjt:  PPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN

A0A2N9HA71 Uncharacterized protein7.5e-1642.03Show/hide
Query:  KLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCT-------AATTTTPPPALQSPPRNYIPPPPPPEFYGGYMTP--------SSYSFWAPPPP
        ++W++ + +    TS  Q+  P+   LCISDC+TCPV+C+       + +  +PP    SPP++Y   PPPP      +TP        SSYS W  PPP
Subjt:  KLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCT-------AATTTTPPPALQSPPRNYIPPPPPPEFYGGYMTP--------SSYSFWAPPPP

Query:  PVGVYFSGARPSG----QMPRTAGPGDYSYPYYYFYSS
        P  +YF+   PSG    +MP  AGP DY YPYYYFYSS
Subjt:  PVGVYFSGARPSG----QMPRTAGPGDYSYPYYYFYSS

A0A6A1VUN3 Uncharacterized protein2.3e-1241.1Show/hide
Query:  LKLWVLAVALFSW-PTSNGQVAVPA--QLCISDCSTCPVVCT------AATTTTPPPALQS--------------PPRNYIPPPPPPEFYGGYMTP----
        LK+W+  + +F+   TS  Q+  P+   LCISDC+TCPV+C+            PPP + S              PP   +P PPPP     Y  P    
Subjt:  LKLWVLAVALFSW-PTSNGQVAVPA--QLCISDCSTCPVVCT------AATTTTPPPALQS--------------PPRNYIPPPPPPEFYGGYMTP----

Query:  -SSYSFWAPPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSS
         +SYS   PPP P  +YFS   PSGQ P TAGP DY YPYYYF +S
Subjt:  -SSYSFWAPPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSS

A0A6J1FKD3 leucine-rich repeat extensin-like protein 21.4e-2557.86Show/hide
Query:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFW
        MPF+      TSL LWV+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T           PR+Y    PPPPP FYGGYM P     SSY F 
Subjt:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFW

Query:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
          P PPV  Y SGA+PSGQMP+T GP DYSYPYYYFYSSN
Subjt:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN

A0A6J1IUS7 leucine-rich repeat extensin-like protein 14.2e-2760Show/hide
Query:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYI--PPPPPPEFYGGYMTP-----SSYSFW
        MPF+      TSL L V+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T T  P +  S    YI  PPPPPP FYGGYM P     SSY F+
Subjt:  MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNYI--PPPPPPEFYGGYMTP-----SSYSFW

Query:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
          PPPPV  Y SGA+PSGQMP+T GP DYSYPYYYFYSSN
Subjt:  APPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11990.1 proline-rich family protein5.3e-0631.37Show/hide
Query:  VLAVALFSWPTSNGQVAVPAQLCISDCSTCPVVCT--------------------AATTTTPPPALQSPP---RNYIPP-------PPPPEFYGGYMTPS
        V+ + + S P+    V  P  LCIS+CSTCP +C+                    +++   PPP   SPP   ++  PP       PPPP FY    TP 
Subjt:  VLAVALFSWPTSNGQVAVPAQLCISDCSTCPVVCT--------------------AATTTTPPPALQSPP---RNYIPP-------PPPPEFYGGYMTPS

Query:  SYSFWAPPPP--------PVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN
              PPPP        P  V  S   P GQ      P  Y +PY+YFY+++
Subjt:  SYSFWAPPPP--------PVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTTCGACGAACAAGTTTGAAGCTTTGGGTTTTGGCAGTGGCTCTGTTTTCTTGGCCAACATCCAACGGCCAGGTGGCTGTCCCCGCCCAGCTCTGCATCAGCGA
TTGCTCCACGTGTCCGGTGGTTTGCACGGCGGCAACGACAACAACACCACCTCCGGCGCTCCAATCGCCGCCGCGCAACTACATTCCGCCGCCCCCGCCGCCTGAATTTT
ACGGTGGGTATATGACGCCGTCGTCGTATTCTTTCTGGGCTCCGCCGCCGCCTCCGGTGGGGGTTTACTTTTCCGGTGCGCGACCGTCGGGGCAAATGCCGCGGACGGCG
GGGCCGGGGGATTATTCTTATCCTTATTACTATTTTTACAGTTCGAATGGCGAGTTGGTGGGACGTTGGTTTATTTTTTTGGAGATAATCCAATTCAACACCATGATCAT
AGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTTCGACGAACAAGTTTGAAGCTTTGGGTTTTGGCAGTGGCTCTGTTTTCTTGGCCAACATCCAACGGCCAGGTGGCTGTCCCCGCCCAGCTCTGCATCAGCGA
TTGCTCCACGTGTCCGGTGGTTTGCACGGCGGCAACGACAACAACACCACCTCCGGCGCTCCAATCGCCGCCGCGCAACTACATTCCGCCGCCCCCGCCGCCTGAATTTT
ACGGTGGGTATATGACGCCGTCGTCGTATTCTTTCTGGGCTCCGCCGCCGCCTCCGGTGGGGGTTTACTTTTCCGGTGCGCGACCGTCGGGGCAAATGCCGCGGACGGCG
GGGCCGGGGGATTATTCTTATCCTTATTACTATTTTTACAGTTCGAATGGCGAGTTGGTGGGACGTTGGTTTATTTTTTTGGAGATAATCCAATTCAACACCATGATCAT
AGGTTAA
Protein sequenceShow/hide protein sequence
MPFRRTSLKLWVLAVALFSWPTSNGQVAVPAQLCISDCSTCPVVCTAATTTTPPPALQSPPRNYIPPPPPPEFYGGYMTPSSYSFWAPPPPPVGVYFSGARPSGQMPRTA
GPGDYSYPYYYFYSSNGELVGRWFIFLEIIQFNTMIIG