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Sed0023040 (gene) of Chayote v1 genome

Gene IDSed0023040
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG04:2410680..2411108
RNA-Seq ExpressionSed0023040
SyntenySed0023040
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022941969.1 uncharacterized protein LOC111447176 [Cucurbita moschata]4.6e-4171.85Show/hide
Query:  PFFHRRTAVVSPKFRSISAISPPQLRRK-GAPRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYN
        PFFHR +AVV PKFR +S +SPP LRR+  APRCVSQGGW  S AELER      EEW+KLGRLE KCG G +G+VE+LE LEREAIMGEDEGRDP DY+
Subjt:  PFFHRRTAVVSPKFRSISAISPPQLRRK-GAPRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYN

Query:  RRAKIFSTSSRVFQALKQQHSQDEHEEEDREEKEQ
        RRAKIFSTSSRVFQALK QHS DE EE +RE K++
Subjt:  RRAKIFSTSSRVFQALKQQHSQDEHEEEDREEKEQ

XP_022942933.1 uncharacterized protein LOC111447817 [Cucurbita moschata]1.6e-4174.6Show/hide
Query:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE
        +S  L+TPPP PPFFHR + VV  K R ISAISP  L R+    APRCVSQGGW GS AE E EEW+KLGRLE KCGGG +GVVE+LECLEREAIMGEDE
Subjt:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE

Query:  GRDPNDYNRRAKIFSTSSRVFQALKQ
        GR+P DYNRRAKIFSTSS VFQALKQ
Subjt:  GRDPNDYNRRAKIFSTSSRVFQALKQ

XP_022988679.1 uncharacterized protein LOC111485933 [Cucurbita maxima]2.3e-4069.12Show/hide
Query:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE
        +S  L+ PPP P FFHR + VV PK R ISAISPP   R+    APRCVSQGGW GS AE E EEW+KLGRL+ KCGGG +GVVE+LECLEREAIMGEDE
Subjt:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE

Query:  GRDPNDYNRRAKIFSTSSRVFQALKQQH--SQDEHE
        GR+P DYNRRAKIFSTSS VFQALKQ    + D H+
Subjt:  GRDPNDYNRRAKIFSTSSRVFQALKQQH--SQDEHE

XP_023541783.1 uncharacterized protein LOC111801831 [Cucurbita pepo subsp. pepo]7.8e-4171.11Show/hide
Query:  PFFHRRTAVVSPKFRSISAISPPQLRRKG-APRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYN
        PFFHR +AVV PKFR +S +SPP LRR+G APRCVSQGGW  S AELER      EEW+KLGRLE KCG G +G+VE+LE LEREAIMGEDEGRDP +Y+
Subjt:  PFFHRRTAVVSPKFRSISAISPPQLRRKG-APRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYN

Query:  RRAKIFSTSSRVFQALKQQHSQDEHEEEDREEKEQ
        RRAKIFSTSSRVFQALK +HS DE EE +RE K++
Subjt:  RRAKIFSTSSRVFQALKQQHSQDEHEEEDREEKEQ

XP_023547061.1 uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo]8.6e-4069.47Show/hide
Query:  LLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPN
        ++ PP PPF HR + V  PK R ISAISPP   R+    APRCVSQGGW GS AE E EEW+KLGRLE KCGGG +GVVE+LECLEREAIMGEDEGR+P 
Subjt:  LLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPN

Query:  DYNRRAKIFSTSSRVFQALKQQH--SQDEHE
        DYNRRAKIFSTSS VFQALKQ    + D H+
Subjt:  DYNRRAKIFSTSSRVFQALKQQH--SQDEHE

TrEMBL top hitse value%identityAlignment
A0A0A0KQQ4 Uncharacterized protein1.4e-3561.83Show/hide
Query:  MPISLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGA-----PRCVSQGGWEGS--PAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAI
        M +S  L++PPPPP  HR +    P  R   ++S P L  + A     PRCVSQGGW  S    E++ EEW+KLGRLE KCGGG +G+VE+LECLE+EAI
Subjt:  MPISLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGA-----PRCVSQGGWEGS--PAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAI

Query:  MGEDEGRDPNDYNRRAKIFSTSSRVFQALKQ
        MGEDEGRDP DYNRRAKIFSTSS VFQALKQ
Subjt:  MGEDEGRDPNDYNRRAKIFSTSSRVFQALKQ

A0A6J1D0H7 uncharacterized protein LOC1110159262.5e-3771.54Show/hide
Query:  SLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGAPRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGED
        S+F L PPPPP  HR +AV   KFR  SAISP   RR  A RCVSQGGW GS AELER      EEW+KLGRL+ KCGGG +GVVE+LECLE EAIMGED
Subjt:  SLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGAPRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGED

Query:  EGRDPNDYNRRAKIFSTSSRVFQALKQQHS
        EGRDP DY+RRAKIFSTSS+VFQALKQQ+S
Subjt:  EGRDPNDYNRRAKIFSTSSRVFQALKQQHS

A0A6J1FPZ7 uncharacterized protein LOC1114471762.2e-4171.85Show/hide
Query:  PFFHRRTAVVSPKFRSISAISPPQLRRK-GAPRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYN
        PFFHR +AVV PKFR +S +SPP LRR+  APRCVSQGGW  S AELER      EEW+KLGRLE KCG G +G+VE+LE LEREAIMGEDEGRDP DY+
Subjt:  PFFHRRTAVVSPKFRSISAISPPQLRRK-GAPRCVSQGGWEGSPAELER------EEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYN

Query:  RRAKIFSTSSRVFQALKQQHSQDEHEEEDREEKEQ
        RRAKIFSTSSRVFQALK QHS DE EE +RE K++
Subjt:  RRAKIFSTSSRVFQALKQQHSQDEHEEEDREEKEQ

A0A6J1FW01 uncharacterized protein LOC1114478177.6e-4274.6Show/hide
Query:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE
        +S  L+TPPP PPFFHR + VV  K R ISAISP  L R+    APRCVSQGGW GS AE E EEW+KLGRLE KCGGG +GVVE+LECLEREAIMGEDE
Subjt:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE

Query:  GRDPNDYNRRAKIFSTSSRVFQALKQ
        GR+P DYNRRAKIFSTSS VFQALKQ
Subjt:  GRDPNDYNRRAKIFSTSSRVFQALKQ

A0A6J1JM89 uncharacterized protein LOC1114859331.1e-4069.12Show/hide
Query:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE
        +S  L+ PPP P FFHR + VV PK R ISAISPP   R+    APRCVSQGGW GS AE E EEW+KLGRL+ KCGGG +GVVE+LECLEREAIMGEDE
Subjt:  ISLFLLTPPP-PPFFHRRTAVVSPKFRSISAISPPQLRRK---GAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDE

Query:  GRDPNDYNRRAKIFSTSSRVFQALKQQH--SQDEHE
        GR+P DYNRRAKIFSTSS VFQALKQ    + D H+
Subjt:  GRDPNDYNRRAKIFSTSSRVFQALKQQH--SQDEHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G05220.1 unknown protein9.3e-1650Show/hide
Query:  APRCVSQGG-WEGSPAELEREEWMKLGRLEAKCGGG-EQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRVFQALKQQHSQ
        A RCV+ G  +  +   +  EE  +L +    CGG   +GV E+LECLE+EAIMG D+GRDP DYNRRAKIF  SS++F+ L +Q  Q
Subjt:  APRCVSQGG-WEGSPAELEREEWMKLGRLEAKCGGG-EQGVVEMLECLEREAIMGEDEGRDPNDYNRRAKIFSTSSRVFQALKQQHSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATCTCTCTGTTTCTTCTAACACCGCCACCGCCACCCTTCTTCCACCGCCGCACCGCCGTCGTTTCCCCCAAATTCAGGTCAATTTCAGCCATTTCCCCACCACA
GCTCCGCCGTAAGGGGGCACCAAGATGTGTAAGTCAGGGTGGCTGGGAGGGCTCTCCGGCGGAGTTGGAGAGAGAAGAGTGGATGAAGCTAGGGAGGCTGGAGGCCAAGT
GCGGCGGCGGCGAACAGGGAGTGGTGGAGATGCTCGAGTGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGACCCTAATGATTACAATAGAAGGGCTAAG
ATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTCAAACAACAACATTCTCAAGATGAACATGAAGAAGAAGACAGAGAGGAAAAAGAACAAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATCTCTCTGTTTCTTCTAACACCGCCACCGCCACCCTTCTTCCACCGCCGCACCGCCGTCGTTTCCCCCAAATTCAGGTCAATTTCAGCCATTTCCCCACCACA
GCTCCGCCGTAAGGGGGCACCAAGATGTGTAAGTCAGGGTGGCTGGGAGGGCTCTCCGGCGGAGTTGGAGAGAGAAGAGTGGATGAAGCTAGGGAGGCTGGAGGCCAAGT
GCGGCGGCGGCGAACAGGGAGTGGTGGAGATGCTCGAGTGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGACCCTAATGATTACAATAGAAGGGCTAAG
ATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTCAAACAACAACATTCTCAAGATGAACATGAAGAAGAAGACAGAGAGGAAAAAGAACAAGGATGA
Protein sequenceShow/hide protein sequence
MPISLFLLTPPPPPFFHRRTAVVSPKFRSISAISPPQLRRKGAPRCVSQGGWEGSPAELEREEWMKLGRLEAKCGGGEQGVVEMLECLEREAIMGEDEGRDPNDYNRRAK
IFSTSSRVFQALKQQHSQDEHEEEDREEKEQG