; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0023047 (gene) of Chayote v1 genome

Gene IDSed0023047
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG09:36890690..36891475
RNA-Seq ExpressionSed0023047
SyntenySed0023047
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]1.8e-4669.38Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQL----PPPPVIECPP---PPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS
        MAN   I  TF LF+  KF  L+SA+AV  DQ+ CSMCS+CDNPCQL    PPPPV+ECPP   PPPPPSPPPPLP S+CPPPP PPSCDAC YPSPP  
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQL----PPPPVIECPP---PPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS

Query:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL
            QP+PP+DGGQFPG+ PPPPNPILPYFPYYYY+PPS S KSV FSW + PL FLII+
Subjt:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL

XP_022960417.1 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like [Cucurbita moschata]8.5e-4167.72Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ
        MANL SI FTFLLFT  KF FL+SATAV  DQ+ CSMCSSCDNPCQLPPP     PPPPPPP+       S+CPPPPPPPSC  C +PS  PPSS QPYQ
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ

Query:  PFPPADGGQFPGVT-PPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV
           PADG QFPG+  PPPPNPILPY+PYYYY+PP+ S + VS SW I PLG LII+C+
Subjt:  PFPPADGGQFPGVT-PPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV

XP_022991777.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]4.7e-3965.62Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPP-------VIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS
        MA+L SI  T  LF+ SKF  L+ AT    DQ+ CSMCSSCDNPCQLPPPP       V++CPPPP P  PPPPLP  ECPPPP PPSCDAC YPSPP  
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPP-------VIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS

Query:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL
            QP+ P DGGQ+PGV PPPPNPILPYFPYYYYTPPS S KSV FSW   PL F++ L
Subjt:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL

XP_023514546.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]5.9e-4267.52Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ
        M NL SI FTFLLFT SKF FL+SATAV  DQ+ CSMCSSCDNPCQLP       PPPPPPP+       S+CPPPPPPPSC  C +PS  PPSS QPY 
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ

Query:  PFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV
           PADGGQFPG+ PPPPNPILPY+PYYYY+PP+ S +SVS SW I PLG LII+C+
Subjt:  PFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV

XP_023549397.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]2.9e-4167.95Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPP--VIEC-PPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSSDQPY
        MA+L SI  T  L + SKF  L+SAT    DQ+ CSMCSSCDNPCQLPPPP  +++C PPPPPPPSPPPPLP  ECPPPP PPSCDAC YPSPP      
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPP--VIEC-PPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSSDQPY

Query:  QPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL
        QP+ P DGGQ+PG+ PPPPNPILPYFPYYYYTPPS S KSV FSW   PL F++ L
Subjt:  QPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein3.3e-4670Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQL----PPPPVIECPPP---PPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS
        MANL SI  TF L + +KF  L+SATAV  DQ+ CSMCS+CDNPCQL    PPPPV+ECPPP   PPPPSPPPPLP S+CPPPP PPSCDAC YPSPP  
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQL----PPPPVIECPPP---PPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS

Query:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL
            QP+PP+ GGQFPG+ PPPPNPILPYFPYYYY+PPS S KSV FSW    L FLIIL
Subjt:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL

A0A5D3D2P5 Extensin-28.6e-4769.38Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQL----PPPPVIECPP---PPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS
        MAN   I  TF LF+  KF  L+SA+AV  DQ+ CSMCS+CDNPCQL    PPPPV+ECPP   PPPPPSPPPPLP S+CPPPP PPSCDAC YPSPP  
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQL----PPPPVIECPP---PPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS

Query:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL
            QP+PP+DGGQFPG+ PPPPNPILPYFPYYYY+PPS S KSV FSW + PL FLII+
Subjt:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL

A0A6J1H7D0 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like4.1e-4167.72Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ
        MANL SI FTFLLFT  KF FL+SATAV  DQ+ CSMCSSCDNPCQLPPP     PPPPPPP+       S+CPPPPPPPSC  C +PS  PPSS QPYQ
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ

Query:  PFPPADGGQFPGVT-PPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV
           PADG QFPG+  PPPPNPILPY+PYYYY+PP+ S + VS SW I PLG LII+C+
Subjt:  PFPPADGGQFPGVT-PPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV

A0A6J1JMT5 leucine-rich repeat extensin-like protein 32.3e-3965.62Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPP-------VIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS
        MA+L SI  T  LF+ SKF  L+ AT    DQ+ CSMCSSCDNPCQLPPPP       V++CPPPP P  PPPPLP  ECPPPP PPSCDAC YPSPP  
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPP-------VIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSS

Query:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL
            QP+ P DGGQ+PGV PPPPNPILPYFPYYYYTPPS S KSV FSW   PL F++ L
Subjt:  DQPYQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL

A0A6J1KR41 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like3.0e-3968.35Show/hide
Query:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ
        MANL SI FTFLLFT SKF FL+SATAV  DQ+ CSMCSSCDNPCQLPP      PPPPPP S  PP      PPPPPPPSC  C +PS  PP+S QPYQ
Subjt:  MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPS--PPSSDQPYQ

Query:  PFPPADGGQFPGVT-PPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV
           PADGGQFPG+  PPPPNPILPY+PYYYY+PP+ S +SVS SW I PLG LII+C+
Subjt:  PFPPADGGQFPGVT-PPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06750.1 hydroxyproline-rich glycoprotein family protein1.5e-0641.67Show/hide
Query:  LLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSSDQPYQPFPPADGGQFPGV
        LL      P L ++    ++ + C+MCSSCDNPC   P P    PPPPPP S       S    PPPP S     YP P   D     +PP   G +   
Subjt:  LLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSSDQPYQPFPPADGGQFPGV

Query:  TPPPPNPILPYFPYYYYTPPSVSAKSVSF-SWLIFPLGFLIILC
        TPPPPNPI+PYFP+YY+TPP   + S    + L+F L F ++LC
Subjt:  TPPPPNPILPYFPYYYYTPPSVSAKSVSF-SWLIFPLGFLIILC

AT4G16140.1 proline-rich family protein1.2e-1345.86Show/hide
Query:  TFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLP-ISECPPPPP----------PPSCDACAYPSPPSSDQP--
        TF LF F  F   T+     +   DC+MC+SCDNPCQ  P P    PPPP  PSPPPP P  + CPPPP           PP+  + +Y  PPSS     
Subjt:  TFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLP-ISECPPPPP----------PPSCDACAYPSPPSSDQP--

Query:  YQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL
        Y P PP  GG +P    PPPNPI+PYFP+YYY PP  S  S S + + F  G   IL
Subjt:  YQPFPPADGGQFPGVTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIIL

AT5G49280.1 hydroxyproline-rich glycoprotein family protein6.1e-1342.94Show/hide
Query:  NLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSC---DACAYPSPPSS--DQPY
        +L+++S   ++   S  P +TS   VV+    C+MCSSCDNPC     PV   PPPP P  PPP  P + CPPPP PPS     +  YP P  S     Y
Subjt:  NLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSC---DACAYPSPPSS--DQPY

Query:  QP----------FPPADGGQFPGVTPPPPNPILPYFPYYYYTPP--SVSAKSVSFSWLIFPLGFLIILCV
         P          +PP   G +P  TPPPPNPI+PYFP+YY+TPP  S S + +S   +IF L F + LC+
Subjt:  QP----------FPPADGGQFPGVTPPPPNPILPYFPYYYYTPP--SVSAKSVSFSWLIFPLGFLIILCV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATCTCTTCTCAATTTCTTTCACTTTCTTACTCTTTACATTCTCAAAATTTCCCTTTCTCACGTCGGCGACCGCCGTCGTCAACGATCAGCTCGACTGTTCCAT
GTGCTCAAGCTGTGACAATCCCTGCCAACTTCCACCGCCGCCAGTTATTGAATGTCCGCCGCCCCCTCCGCCGCCATCTCCGCCACCGCCACTCCCAATTTCCGAATGCC
CTCCACCGCCACCGCCTCCCTCGTGTGATGCATGCGCCTACCCTTCTCCGCCGTCCTCCGACCAGCCGTACCAGCCATTCCCGCCGGCCGACGGCGGCCAATTTCCCGGC
GTTACTCCGCCGCCGCCGAACCCAATATTACCGTATTTTCCTTACTATTATTACACTCCCCCCTCTGTTTCTGCAAAATCCGTTTCGTTTTCATGGTTAATTTTTCCTTT
GGGTTTCTTAATTATTCTTTGCGTTTAA
mRNA sequenceShow/hide mRNA sequence
TTCCCATCAATGGCGAATCTCTTCTCAATTTCTTTCACTTTCTTACTCTTTACATTCTCAAAATTTCCCTTTCTCACGTCGGCGACCGCCGTCGTCAACGATCAGCTCGA
CTGTTCCATGTGCTCAAGCTGTGACAATCCCTGCCAACTTCCACCGCCGCCAGTTATTGAATGTCCGCCGCCCCCTCCGCCGCCATCTCCGCCACCGCCACTCCCAATTT
CCGAATGCCCTCCACCGCCACCGCCTCCCTCGTGTGATGCATGCGCCTACCCTTCTCCGCCGTCCTCCGACCAGCCGTACCAGCCATTCCCGCCGGCCGACGGCGGCCAA
TTTCCCGGCGTTACTCCGCCGCCGCCGAACCCAATATTACCGTATTTTCCTTACTATTATTACACTCCCCCCTCTGTTTCTGCAAAATCCGTTTCGTTTTCATGGTTAAT
TTTTCCTTTGGGTTTCTTAATTATTCTTTGCGTTTAAAGAAAAATTGAAATCTCCATTGCTGACTGAGAATTGGGTTTCCTCTGTAATTTTTGCTGCGATTTGAAGAACA
GAGTGAGGACGAAGAAGAAGGGTAGTTACGTCAAGATAATTCATTGTAGGCTGATTATGAATGTATTTCATAAATTAAGATGTATTCATTAATGATTCTTTATTTTACTT
TTTTACTTTGAATTTTTTTTTCTTTGGGGGGTTGAAAATTGAAATGTCAATGTATTCTAAGGAAATGTCTAATGTAACTATATAGTCATTTCACATGATAGTACTTTTTT
AAAAAGTAAATGTTAT
Protein sequenceShow/hide protein sequence
MANLFSISFTFLLFTFSKFPFLTSATAVVNDQLDCSMCSSCDNPCQLPPPPVIECPPPPPPPSPPPPLPISECPPPPPPPSCDACAYPSPPSSDQPYQPFPPADGGQFPG
VTPPPPNPILPYFPYYYYTPPSVSAKSVSFSWLIFPLGFLIILCV