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Sed0023077 (gene) of Chayote v1 genome

Gene IDSed0023077
OrganismSechium edule (Chayote v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationLG13:4026367..4030375
RNA-Seq ExpressionSed0023077
SyntenySed0023077
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QHO02825.1 uncharacterized protein DS421_13g427100 [Arachis hypogaea]6.6e-4190.8Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRK+++KPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASCRICQE FS T+TALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

XP_015956401.1 transcription elongation factor 1 homolog isoform X3 [Arachis duranensis]6.6e-4190.8Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRK+++KPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASCRICQE FS T+TALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

XP_015956405.1 transcription elongation factor 1 homolog isoform X9 [Arachis duranensis]3.0e-4193.1Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRKS AKPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASCRICQE FS T+TALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

XP_020672057.1 transcription elongation factor 1 homolog [Dendrobium catenatum]1.3e-4193.1Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHG+SVECRID+KNLIGEASCRICQE FSMTITAL+EPID+YSEWIDECERVNN EDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

XP_022943265.1 transcription elongation factor 1 homolog [Cucurbita moschata]1.7e-4194.25Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRKSRAKPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +ITALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

TrEMBL top hitse value%identityAlignment
A0A444ZWD9 Transcription elongation factor 1 homolog1.4e-4193.1Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRKS AKPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASCRICQE FS T+TALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

A0A6J1FXL7 Transcription elongation factor 1 homolog8.4e-4294.25Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRKSRAKPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +ITALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

A0A6J1J7P5 Transcription elongation factor 1 homolog8.4e-4294.25Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRKSRAKPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +ITALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

A0A6P4CY99 Transcription elongation factor 1 homolog1.4e-4193.1Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG
        MGKRKS AKPPPKKRMDKLDTVF CPFCNHGTSVECRIDMKNLIGEASCRICQE FS T+TALSEPID+YSEWIDECERVNNPEDDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDG

M5WI77 Transcription elongation factor 1 homolog3.2e-4193.26Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDGDG
        MGKRKS AKPPPKKRMDKLDTVF CPFC+HGTSVECRIDMKNLIGEASCRICQE FS TITALSEPIDVYSEWIDECERVNN EDDGDG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDGDG

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog3.0e-2054.88Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F CPFCNH  S + ++D     G  SC +C E F   IT LSEP+DVYS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVN

P36053 Transcription elongation factor 13.0e-2051.09Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVN----NPEDDGD
        MGKRK   + P K+ + KLDT F C FCNH  SV C +D KN IG  SC+IC + F   I +LS+P+DVYS+W D  E VN    +  DDGD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVN----NPEDDGD

P60002 Transcription elongation factor 1 homolog3.0e-2054.88Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F CPFCNH  S + ++D     G  SC +C E F   IT LSEP+DVYS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog1.7e-3680.23Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDD
        MGKRKSRAKP P KRMDKLDT+F CPFCNHG+SVEC IDMK+LIG+A+CRIC+E FS TITAL+E ID+YSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDD

Q8LHP0 Transcription elongation factor 1 homolog5.3e-4188.37Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDD
        MGKRKS AKPPPKKRMDKLDTVF CPFCNHG+SVECRIDMKNLIGEASCRICQE FS T+ AL+EPID+YSEWIDECERVNN EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein1.2e-3780.23Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDD
        MGKRKSRAKP P KRMDKLDT+F CPFCNHG+SVEC IDMK+LIG+A+CRIC+E FS TITAL+E ID+YSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAAAGAAAGTCGAGAGCCAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTTGCTGCCCTTTCTGCAATCATGGGACCAGTGTAGAATGTCG
CATTGATATGAAGAACCTGATTGGAGAGGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCATGACCATTACTGCCTTGTCCGAGCCAATAGACGTATATAGCGAATGGA
TCGATGAATGTGAGCGGGTCAACAACCCCGAAGACGATGGTGATGGTGATGGTACCTAG
mRNA sequenceShow/hide mRNA sequence
CAACGATTCAAACAGCGAACGATAAATCCTCCAAATTCCATCGGCGATCAGTCCTAACCACAAGAATGGGGAAAAGAAAGTCGAGAGCCAAGCCCCCACCTAAGAAGAGA
ATGGACAAGCTTGATACTGTTTTTTGCTGCCCTTTCTGCAATCATGGGACCAGTGTAGAATGTCGCATTGATATGAAGAACCTGATTGGAGAGGCCTCCTGTAGGATTTG
CCAAGAAGGCTTTAGCATGACCATTACTGCCTTGTCCGAGCCAATAGACGTATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCCGAAGACGATGGTGATG
GTGATGGTACCTAGGGGTATCAATTTGGGAAGGTTAAAGCTTGTGTTTGGCTATGAAAAAGAAGCTGGTTAGTTTTCCTTAATGTATCTAAATTAAGAAGCTGGATAGTA
TAGACAAGCATGTATGTACAGTAGTAGTAGTAGTAGTAGTAGTATGTTGTAATGTGTGGCTTGCACTTTGATTTAATCACGTATTATATGTACCCGTAACTTTGTTTCAT
AAAGTAAAATATTCATGTTAATGTAATTCAGATTCTCTTGAA
Protein sequenceShow/hide protein sequence
MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSMTITALSEPIDVYSEWIDECERVNNPEDDGDGDGT