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Sed0023096 (gene) of Chayote v1 genome

Gene IDSed0023096
OrganismSechium edule (Chayote v1)
Descriptionvacuolar protein sorting-associated protein 55 homolog
Genome locationLG05:1990599..1993421
RNA-Seq ExpressionSed0023096
SyntenySed0023096
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0006048 - UDP-N-acetylglucosamine biosynthetic process (biological process)
GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0005768 - endosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004610 - phosphoacetylglucosamine mutase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC26716.1 hypothetical protein L484_023330 [Morus notabilis]3.4e-4672.06Show/hide
Query:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH
        MADL +    C H  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF GSD S+LFSES +SWV+ATKFLTGASAVGSIAIP ILKH
Subjt:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH

Query:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYY
        A +IGWGALA+ LSS  VFV+AI C++  ++EDNYY
Subjt:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYY

XP_021599879.1 vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta]9.9e-4672.46Show/hide
Query:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH
        MADL      C    K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVLLPMPLLFF GSDSSSLFSES +SWV+ATKFLTGASAVGSIAIP ILKH
Subjt:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH

Query:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL
        A +IGWGALA+ LSS  VFV+AI CY+  ++ED Y IL
Subjt:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL

XP_022155500.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]4.0e-4771.01Show/hide
Query:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH
        MADL      CF M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVLLPMPLLFF GSDSSSL++ES DSW++ATKFLTGAS +GSIAIP+ILKH
Subjt:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH

Query:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL
        A IIGWGALA+ LSS +VFV+AI C+LW + +D+ Y +
Subjt:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL

XP_022157395.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]1.4e-5584.33Show/hide
Query:  MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADII
        MADLG C+HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+LLPMPLLFF GSD+SSL SESGDSWV+ATKFLTGAS VGSIAIPVILKHA+II
Subjt:  MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADII

Query:  GWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL
        GWGALAL LSSL+VFVVAI CYLW SNED+Y  L
Subjt:  GWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL

XP_024030670.1 vacuolar protein sorting-associated protein 55 homolog [Morus notabilis]3.4e-4672.06Show/hide
Query:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH
        MADL +    C H  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF GSD S+LFSES +SWV+ATKFLTGASAVGSIAIP ILKH
Subjt:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH

Query:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYY
        A +IGWGALA+ LSS  VFV+AI C++  ++EDNYY
Subjt:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYY

TrEMBL top hitse value%identityAlignment
A0A0A0L5B3 Uncharacterized protein4.8e-4673.08Show/hide
Query:  ADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIG
        A L  C  M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVLLPMPLLFF GSDSSSL+++S DSW++ATKFLTGAS VGSIAIPVILKHA IIG
Subjt:  ADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIG

Query:  WGALALSLSSLIVFVVAIFCYLWTSNEDNY
        WGA+A+ LSS +VFVVAI C++  S +D+Y
Subjt:  WGALALSLSSLIVFVVAIFCYLWTSNEDNY

A0A2C9U468 Uncharacterized protein4.8e-4672.46Show/hide
Query:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH
        MADL      C    K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVLLPMPLLFF GSDSSSLFSES +SWV+ATKFLTGASAVGSIAIP ILKH
Subjt:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH

Query:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL
        A +IGWGALA+ LSS  VFV+AI CY+  ++ED Y IL
Subjt:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL

A0A6J1DML0 vacuolar protein sorting-associated protein 55 homolog2.0e-4771.01Show/hide
Query:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH
        MADL      CF M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVLLPMPLLFF GSDSSSL++ES DSW++ATKFLTGAS +GSIAIP+ILKH
Subjt:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH

Query:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL
        A IIGWGALA+ LSS +VFV+AI C+LW + +D+ Y +
Subjt:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL

A0A6J1DSZ0 vacuolar protein sorting-associated protein 55 homolog6.7e-5684.33Show/hide
Query:  MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADII
        MADLG C+HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+LLPMPLLFF GSD+SSL SESGDSWV+ATKFLTGAS VGSIAIPVILKHA+II
Subjt:  MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADII

Query:  GWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL
        GWGALAL LSSL+VFVVAI CYLW SNED+Y  L
Subjt:  GWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL

W9SFY2 Uncharacterized protein1.7e-4672.06Show/hide
Query:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH
        MADL +    C H  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF GSD S+LFSES +SWV+ATKFLTGASAVGSIAIP ILKH
Subjt:  MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKH

Query:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYY
        A +IGWGALA+ LSS  VFV+AI C++  ++EDNYY
Subjt:  ADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYY

SwissProt top hitse value%identityAlignment
P47111 Vacuolar protein sorting-associated protein 552.7e-0926.83Show/hide
Query:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSD---SSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALA
        ++K+++L   ++ G +L  L+CAL++N++PL  +++++L P+P   F   +   +S   S+S ++  D   FLTG      IA+PV+  H  +IG  +  
Subjt:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSD---SSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALA

Query:  LSLSSLIVFVVAIFCYLWTSNED
        + +   ++   +I  + W   +D
Subjt:  LSLSSLIVFVVAIFCYLWTSNED

Q32PD8 Leptin receptor overlapping transcript-like 16.8e-0531.3Show/hide
Query:  GIVLQFLACAL--YNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATK----FLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV
        G++   L CAL  YN +WPL  +  Y+L P+P         +    +  D+  +A K    FLT    V +  +P++   A++I WGA AL L+   V  
Subjt:  GIVLQFLACAL--YNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATK----FLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV

Query:  VAI--FCYLWTSNED
          I  F  ++ SN+D
Subjt:  VAI--FCYLWTSNED

Q54VP1 Vacuolar protein sorting-associated protein 55 homolog1.3e-0834.26Show/hide
Query:  GIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCY
        G++   LAC + ++ +P++ V  Y L P P +     DS   FS    ++ D   FLTG       AIP+IL H+DII   ALA S++  +     I  +
Subjt:  GIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCY

Query:  LWTSNEDN
        LW  N  N
Subjt:  LWTSNEDN

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog9.7e-4470Show/hide
Query:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG
        L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+SLF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWG
Subjt:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG

Query:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY
        ALAL LSS +VF+VAI  Y+   +  DNYY
Subjt:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY

Q9UUH1 Vacuolar protein sorting-associated protein 555.9e-0928.8Show/hide
Query:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMP-LLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALS
        + K++ L  +++ G +L  L+CAL+ NW+PLL V+ ++L P+P LL    S S     E   + +D  +F  GA+     A+P++  +  +IG  A  +S
Subjt:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMP-LLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALS

Query:  L--SSLIVFVVAIFCYLWTSNEDNY
            S+I  V+ ++   +  +E+ +
Subjt:  L--SSLIVFVVAIFCYLWTSNEDNY

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein6.9e-4570Show/hide
Query:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG
        L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+SLF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWG
Subjt:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG

Query:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY
        ALAL LSS +VF+VAI  Y+   +  DNYY
Subjt:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein6.9e-4570Show/hide
Query:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG
        L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+SLF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWG
Subjt:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG

Query:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY
        ALAL LSS +VF+VAI  Y+   +  DNYY
Subjt:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein6.9e-4570Show/hide
Query:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG
        L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+SLF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWG
Subjt:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG

Query:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY
        ALAL LSS +VF+VAI  Y+   +  DNYY
Subjt:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY

AT1G32410.4 Vacuolar protein sorting 55 (VPS55) family protein6.9e-4570Show/hide
Query:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG
        L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+SLF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWG
Subjt:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG

Query:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY
        ALAL LSS +VF+VAI  Y+   +  DNYY
Subjt:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY

AT1G32410.5 Vacuolar protein sorting 55 (VPS55) family protein6.9e-4570Show/hide
Query:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG
        L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+SLF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWG
Subjt:  LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWG

Query:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY
        ALAL LSS +VF+VAI  Y+   +  DNYY
Subjt:  ALALSLSSLIVFVVAIFCYLWTSN-EDNYY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACTTGGGAAACTGTTTTCATATGAGCAAAGTCGTAACACTAGGAATTTTGGTTTCTGGTGGGATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAATTG
GTGGCCGTTGCTGAGTGTGGTTATGTATGTTCTTCTCCCAATGCCTTTGCTGTTTTTCACTGGCTCGGATAGTTCTTCGCTATTTTCCGAATCAGGAGACAGTTGGGTCG
ATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTTGGAAGCATTGCCATACCTGTAATTCTGAAGCATGCTGATATTATCGGCTGGGGAGCGCTCGCACTGAGCCTCTCG
TCCCTTATAGTTTTCGTGGTGGCCATTTTTTGTTATCTATGGACAAGTAATGAAGACAACTACTATATACTCTAA
mRNA sequenceShow/hide mRNA sequence
GATAAATTGACAACAAAATAATAGCTAACTAAATGAAATAAAATGGATGATTTCGTGATTTCATTATCATTTGGAGAAGAGAGCAGCAGAATTCTCTGATTTCTTCATTC
CGATTCCGGCGAATCAGCCGGCGAGCTCGTTGTTTTCTCAGTTGTTTTCCTTAATGAAGTGAGAAGAATTACCTGATGGCGGACTTGGGAAACTGTTTTCATATGAGCAA
AGTCGTAACACTAGGAATTTTGGTTTCTGGTGGGATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAATTGGTGGCCGTTGCTGAGTGTGGTTATGTATGTTCTTC
TCCCAATGCCTTTGCTGTTTTTCACTGGCTCGGATAGTTCTTCGCTATTTTCCGAATCAGGAGACAGTTGGGTCGATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTT
GGAAGCATTGCCATACCTGTAATTCTGAAGCATGCTGATATTATCGGCTGGGGAGCGCTCGCACTGAGCCTCTCGTCCCTTATAGTTTTCGTGGTGGCCATTTTTTGTTA
TCTATGGACAAGTAATGAAGACAACTACTATATACTCTAAGATGTATCTCCCCTAAAGTACCCATTGCAGTAGAAACCATTTTCCTCGATGTCGAAAATCGTAACTACTT
ATTCTCATTGCCCTCATTTCTGCTGAAGTTGAAAAGATAGTTTTCATATTTTCATTTCGAGTTACAATCTCTCTTCCGTGCTTCAACTTTTATCAAATGGTTTAATGAAT
GCACAGAAACTCCACCGAACGACCGGTGTAGGTGCCCTTAGGTATATAGTGGAACAAAGAGTCAATTCCGAGTTATAAAAAAATGTGGAAG
Protein sequenceShow/hide protein sequence
MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLS
SLIVFVVAIFCYLWTSNEDNYYIL