CuGenDBv2

Gene ID	Sed0023100
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	LG10:27248782..27249081
RNA-Seq Expression	Sed0023100
Synteny	Sed0023100
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

4.9e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AW+
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

KAA0038956.1 copia protein [Cucumis melo var. makuwa]

8.4e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VP QVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AWK
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.7e-42

89.69

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AWK
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.9e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AW+
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.9e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AW+
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT1 Putative copia-type polyprotein

2.4e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AW+
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

A0A5A7TA92 Copia protein

4.1e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VP QVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AWK
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.2e-43

89.69

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AWK
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AW+
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-42

88.66

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK
        MANNN+VPFQVPRLTKENYSSWCIRMKALLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGATTA +AW+
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

3.1e-26

53.06

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Query:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWKF
        MA+NN VPFQVP LTK NY +W +RMKA+LG+ D WEIV++G+ EPEN+ +L+Q Q++ L+++RK+D+KAL +I+Q +D+  FEK+  AT+A +   F
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWKF

Sequences

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CDS sequence

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ATGGCAAACAACAATATGGTTCCTTTCCAAGTGCCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGTATACGAATGAAAGCACTACTTGGTTCACAAGATGCTTGGGA
AATTGTTGATAGAGGCTATGACGAGCCTGAAAATGACGCGGCTTTAAATCAAGCGCAAAGAGAAGCTTTGCAAAATACAAGAAAGAAAGATCAAAAGGCACTTACCATTA
TTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTCTGGAGCAACTACTGCGACGGAAGCATGGAAATTTTTTTAG

mRNA sequence

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Protein sequence

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MANNNMVPFQVPRLTKENYSSWCIRMKALLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATTATEAWKFF

Sed0023100 (gene) of Chayote v1 genome