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Sed0023101 (gene) of Chayote v1 genome

Gene IDSed0023101
OrganismSechium edule (Chayote v1)
DescriptionGibberellin regulated protein
Genome locationLG10:25350679..25351022
RNA-Seq ExpressionSed0023101
SyntenySed0023101
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142881.1 peamaclein [Cucumis sativus]4.6e-2873.26Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLLT +LLLTSF  LS+ A GFC  K   RC+KAGV+DRC+KYCGICCE C CVP GTYGNKHECPCY  +KNSKG SKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

XP_022132053.1 peamaclein-like [Momordica charantia]1.4e-2975.28Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASG---FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLLTC+LLL+ F  LS+ ASG   FCN K + RCAKAGVQDRC+KYCGICCE CHCVP GTYGNKHECPCY +MKNSK K KCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASG---FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

XP_022961995.1 peamaclein-like [Cucurbita moschata]3.2e-2975.58Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLL+ +L+LTSF  LS+ A G C++K   RCAKAGVQDRCLKYCGICCE C CVP GTYGNKHECPCY R+KNSKGKSKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

XP_022997556.1 peamaclein-like [Cucurbita maxima]1.9e-2975.58Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLL+ +L+LTSF  LS+ A GFC++K   RCAKAGVQ+RCLKYCGICCE C CVP GTYGNKHECPCY +MKNSKGKSKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

XP_023546651.1 peamaclein [Cucurbita pepo subsp. pepo]3.8e-3076.74Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLL+ +L+LTSF  LS+ A GFC++K   RCAKAGVQDRCLKYCGICCE C CVP GTYGNKHECPCY +MKNSKGKSKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LKN7 Uncharacterized protein2.2e-2873.26Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLLT +LLLTSF  LS+ A GFC  K   RC+KAGV+DRC+KYCGICCE C CVP GTYGNKHECPCY  +KNSKG SKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

A0A2C9VYQ3 Uncharacterized protein1.1e-2770.24Show/hide
Query:  FLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        F V LL C++L +SFF L++  S FC++K E RCAKAGV+DRCLKYCGICCE C+CVP GTYGNK ECPCY  MKNSKGK KCP
Subjt:  FLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

A0A6J1BV69 peamaclein-like6.9e-3075.28Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASG---FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLLTC+LLL+ F  LS+ ASG   FCN K + RCAKAGVQDRC+KYCGICCE CHCVP GTYGNKHECPCY +MKNSK K KCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASG---FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

A0A6J1HDT0 peamaclein-like1.5e-2975.58Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLL+ +L+LTSF  LS+ A G C++K   RCAKAGVQDRCLKYCGICCE C CVP GTYGNKHECPCY R+KNSKGKSKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

A0A6J1K7T2 peamaclein-like9.0e-3075.58Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        MKFL HLL+ +L+LTSF  LS+ A GFC++K   RCAKAGVQ+RCLKYCGICCE C CVP GTYGNKHECPCY +MKNSKGKSKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

SwissProt top hitse value%identityAlignment
O80641 Gibberellin-regulated protein 81.6e-2055.42Show/hide
Query:  LVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        +V      LLLTS F +  +A   C  K   RC+KAG  + CLKYC ICC+ C+CVP GT+G+K ECPCY  MKNSKG SKCP
Subjt:  LVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

O82328 Gibberellin-regulated protein 72.1e-2066.67Show/hide
Query:  FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        +C  K EGRC +AG++DRCLKYCGICC+ C CVP GTYGNKHEC CY    +SKG  KCP
Subjt:  FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

P86888 Peamaclein1.6e-2372.58Show/hide
Query:  SGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        S FC++K   RC+KAG Q+RCLKYCGICCE CHCVP GTYGNK ECPCY  +KNSKG  KCP
Subjt:  SGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

Q8LFM2 Gibberellin-regulated protein 102.3e-2262.96Show/hide
Query:  LLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETC-HCVPLGTYGNKHECPCYERMKNSKGKSKCP
        L+  +L+ +S F LS   S  C  K   RC+KAG QDRCLKYC ICCE C +CVP GTYGNK ECPCY  MKNSKG SKCP
Subjt:  LLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETC-HCVPLGTYGNKHECPCYERMKNSKGKSKCP

Q948Z4 Snakin-11.7e-2563.53Show/hide
Query:  FLVHLLTCMLLLT-SFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        FL+ LL   L++T S    ++  S FC++K + RC+KAG+ DRCLKYCGICCE C CVP GTYGNKHECPCY   KNSKGKSKCP
Subjt:  FLVHLLTCMLLLT-SFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

Arabidopsis top hitse value%identityAlignment
AT1G10588.1 Gibberellin-regulated family protein1.4e-1957.14Show/hide
Query:  MLLLTSFFHLSVTASGFCNTKYEGRCAKAG-VQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        +LL +SF+ LS   S  C  K   RC+KA    + CL+ C ICC+ C+CVP GTYGNK ECPCY  MKNSKG SKCP
Subjt:  MLLLTSFFHLSVTASGFCNTKYEGRCAKAG-VQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

AT1G10588.2 Gibberellin-regulated family protein1.4e-1952.87Show/hide
Query:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAG-VQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        M  +V      LLLTS F++  +A   C  K   RC+KA    + CL+ C ICC+ C+CVP GTYGNK ECPCY  MKNSKG SKCP
Subjt:  MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAG-VQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

AT2G14900.1 Gibberellin-regulated family protein1.5e-2166.67Show/hide
Query:  FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        +C  K EGRC +AG++DRCLKYCGICC+ C CVP GTYGNKHEC CY    +SKG  KCP
Subjt:  FCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

AT2G39540.1 Gibberellin-regulated family protein1.2e-2155.42Show/hide
Query:  LVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP
        +V      LLLTS F +  +A   C  K   RC+KAG  + CLKYC ICC+ C+CVP GT+G+K ECPCY  MKNSKG SKCP
Subjt:  LVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP

AT5G59845.1 Gibberellin-regulated family protein1.6e-2362.96Show/hide
Query:  LLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETC-HCVPLGTYGNKHECPCYERMKNSKGKSKCP
        L+  +L+ +S F LS   S  C  K   RC+KAG QDRCLKYC ICCE C +CVP GTYGNK ECPCY  MKNSKG SKCP
Subjt:  LLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETC-HCVPLGTYGNKHECPCYERMKNSKGKSKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTCCTAGTTCATCTTCTCACTTGCATGCTCCTTCTCACTTCCTTCTTCCACCTCTCTGTCACTGCCTCAGGTTTCTGCAACACGAAATACGAAGGTAGATGTGC
AAAAGCCGGGGTGCAGGATCGGTGCTTAAAGTACTGTGGCATATGCTGCGAGACATGTCATTGTGTGCCTTTAGGGACTTATGGGAATAAGCATGAGTGCCCTTGCTATG
AGCGGATGAAGAACTCCAAGGGCAAGTCCAAGTGTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTCCTAGTTCATCTTCTCACTTGCATGCTCCTTCTCACTTCCTTCTTCCACCTCTCTGTCACTGCCTCAGGTTTCTGCAACACGAAATACGAAGGTAGATGTGC
AAAAGCCGGGGTGCAGGATCGGTGCTTAAAGTACTGTGGCATATGCTGCGAGACATGTCATTGTGTGCCTTTAGGGACTTATGGGAATAAGCATGAGTGCCCTTGCTATG
AGCGGATGAAGAACTCCAAGGGCAAGTCCAAGTGTCCTTAG
Protein sequenceShow/hide protein sequence
MKFLVHLLTCMLLLTSFFHLSVTASGFCNTKYEGRCAKAGVQDRCLKYCGICCETCHCVPLGTYGNKHECPCYERMKNSKGKSKCP