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Sed0023154 (gene) of Chayote v1 genome

Gene IDSed0023154
OrganismSechium edule (Chayote v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationLG06:37498336..37498796
RNA-Seq ExpressionSed0023154
SyntenySed0023154
Gene Ontology termsGO:0006515 - protein quality control for misfolded or incompletely synthesized proteins (biological process)
GO:0009368 - endopeptidase Clp complex (cellular component)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
GO:0051117 - ATPase binding (molecular function)
InterPro domainsIPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060718.1 ATP-dependent Clp protease proteolytic subunit 3 [Cucumis melo var. makuwa]2.1e-5083.33Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KPLEQIE+DTDRDNF+N WEAKEYGLIDEVIDDGKPGL+APIAE T PPKTRVWD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        +NG Q G+GSD+ERG+QQE+EEPS V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

XP_008457103.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]2.1e-5083.33Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KPLEQIE+DTDRDNF+N WEAKEYGLIDEVIDDGKPGL+APIAE T PPKTRVWD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        +NG Q G+GSD+ERG+QQE+EEPS V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

XP_011651427.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis sativus]1.2e-4881.1Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KP+EQIE+DT+RDNF+N WEAKEYGLIDEVIDDGKPGL+APIAE T PPKTR+WD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQK-GQGSDKERGTQQESEEPSHV
        +NG ++ GQGSDKERG QQE+EEPS V
Subjt:  QNGSQK-GQGSDKERGTQQESEEPSHV

XP_022143418.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Momordica charantia]1.6e-5083.33Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KPLEQIE+DTDRDNF+N WEAKEYGLIDEVIDDGKPGL+APIA+   PPKTRVWD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        QNG Q GQG+D+ERGTQQE+EEPS V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

XP_038902354.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Benincasa hispida]8.1e-5082.54Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KPLEQIE+DTDRDNF+N WEAK+YGLIDEVIDDGKPGL+AP AE T PPKTRVWD WKVEG RK  KNLPSENKI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        QNG Q+GQGSD+ERG+QQE+EE S V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

TrEMBL top hitse value%identityAlignment
A0A0A0LA84 ATP-dependent Clp protease proteolytic subunit5.7e-4981.1Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KP+EQIE+DT+RDNF+N WEAKEYGLIDEVIDDGKPGL+APIAE T PPKTR+WD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQK-GQGSDKERGTQQESEEPSHV
        +NG ++ GQGSDKERG QQE+EEPS V
Subjt:  QNGSQK-GQGSDKERGTQQESEEPSHV

A0A1S3C615 ATP-dependent Clp protease proteolytic subunit1.0e-5083.33Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KPLEQIE+DTDRDNF+N WEAKEYGLIDEVIDDGKPGL+APIAE T PPKTRVWD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        +NG Q G+GSD+ERG+QQE+EEPS V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

A0A5A7UZN2 ATP-dependent Clp protease proteolytic subunit1.0e-5083.33Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KPLEQIE+DTDRDNF+N WEAKEYGLIDEVIDDGKPGL+APIAE T PPKTRVWD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        +NG Q G+GSD+ERG+QQE+EEPS V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

A0A5B7C7U5 ATP-dependent Clp protease proteolytic subunit1.3e-4574.6Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        M IRIREM YHK+KLNKI SRIT KP +QIEVDTDRDNF+NAWEAKEYGL+D VIDDGKPGL+APIA+   PPKTRVWDQWK+EG +KA KNLPSE KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        QNG   GQG D++RGT+QE E P+ V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

A0A6J1CQN6 ATP-dependent Clp protease proteolytic subunit7.9e-5183.33Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV
        MSIRIREM+YHKIKLNKIFSRIT KPLEQIE+DTDRDNF+N WEAKEYGLIDEVIDDGKPGL+APIA+   PPKTRVWD WKVEG RKA KNLPSE+KI+
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKA-KNLPSENKIV

Query:  QNGSQKGQGSDKERGTQQESEEPSHV
        QNG Q GQG+D+ERGTQQE+EEPS V
Subjt:  QNGSQKGQGSDKERGTQQESEEPSHV

SwissProt top hitse value%identityAlignment
A5I6W1 ATP-dependent Clp protease proteolytic subunit2.2e-1070.83Show/hide
Query:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK
        K KLN I S  T KPLEQ+E+DT+RD+FL+A EAKEYGLIDEVID  K
Subjt:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK

A7FYI2 ATP-dependent Clp protease proteolytic subunit2.2e-1070.83Show/hide
Query:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK
        K KLN I S  T KPLEQ+E+DT+RD+FL+A EAKEYGLIDEVID  K
Subjt:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK

B1IND7 ATP-dependent Clp protease proteolytic subunit2.2e-1070.83Show/hide
Query:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK
        K KLN I S  T KPLEQ+E+DT+RD+FL+A EAKEYGLIDEVID  K
Subjt:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK

C1FLA6 ATP-dependent Clp protease proteolytic subunit2.2e-1070.83Show/hide
Query:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK
        K KLN I S  T KPLEQ+E+DT+RD+FL+A EAKEYGLIDEVID  K
Subjt:  KIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGK

Q9SXJ6 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic5.1e-3976.7Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKAK-NLPSENKIV
        MSIRIREM YHKIKLNKIFSRIT KP  +IE DTDRDNFLN WEAKEYGLID VIDDGKPGL+API + T PPKT+VWD WKVEG +K   NLPSE  + 
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKAK-NLPSENKIV

Query:  QNG
        QNG
Subjt:  QNG

Arabidopsis top hitse value%identityAlignment
AT1G02560.1 nuclear encoded CLP protease 54.8e-0852.73Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVI
        + I+  EM +HK  LN   +  T + LE+I  DTDRD F++A EAKEYGLID VI
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVI

AT1G11750.1 CLP protease proteolytic subunit 68.5e-0535.85Show/hide
Query:  RIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVID
        ++ E    + K++++++  T +PLE+++  T+RD FL+A EA E+GLID +++
Subjt:  RIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVID

AT1G66670.1 CLP protease proteolytic subunit 33.6e-4076.7Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKAK-NLPSENKIV
        MSIRIREM YHKIKLNKIFSRIT KP  +IE DTDRDNFLN WEAKEYGLID VIDDGKPGL+API + T PPKT+VWD WKVEG +K   NLPSE  + 
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKAK-NLPSENKIV

Query:  QNG
        QNG
Subjt:  QNG

AT5G23140.1 nuclear-encoded CLP protease P76.5e-0544.19Show/hide
Query:  LNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDD
        LN+++ + T +PL+ +  + DRD+F+   EAK +G+IDEVID+
Subjt:  LNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDD

AT5G45390.1 CLP protease P41.0e-0535.06Show/hide
Query:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRV
        + I+ +E+ ++K  +  I +  T +  EQ+  D DRD +++  EA EYGLID VID      + P+  V    K RV
Subjt:  MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATACGGATACGAGAGATGTCGTATCACAAGATTAAGCTAAACAAAATTTTCTCTAGAATCACGAGAAAGCCTTTAGAGCAGATTGAAGTAGACACAGATCGTGA
TAATTTTTTGAATGCCTGGGAAGCTAAGGAATACGGTTTGATTGATGAGGTTATTGATGATGGAAAGCCAGGACTCGTTGCTCCGATCGCAGAAGTAACTACTCCACCAA
AGACTCGAGTATGGGATCAATGGAAGGTTGAAGGGATTCGGAAAGCTAAGAATTTGCCTTCAGAAAACAAGATTGTGCAGAATGGATCTCAAAAGGGTCAAGGAAGTGAT
AAGGAGCGCGGCACCCAACAAGAATCAGAAGAACCGAGTCATGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATACGGATACGAGAGATGTCGTATCACAAGATTAAGCTAAACAAAATTTTCTCTAGAATCACGAGAAAGCCTTTAGAGCAGATTGAAGTAGACACAGATCGTGA
TAATTTTTTGAATGCCTGGGAAGCTAAGGAATACGGTTTGATTGATGAGGTTATTGATGATGGAAAGCCAGGACTCGTTGCTCCGATCGCAGAAGTAACTACTCCACCAA
AGACTCGAGTATGGGATCAATGGAAGGTTGAAGGGATTCGGAAAGCTAAGAATTTGCCTTCAGAAAACAAGATTGTGCAGAATGGATCTCAAAAGGGTCAAGGAAGTGAT
AAGGAGCGCGGCACCCAACAAGAATCAGAAGAACCGAGTCATGTATGA
Protein sequenceShow/hide protein sequence
MSIRIREMSYHKIKLNKIFSRITRKPLEQIEVDTDRDNFLNAWEAKEYGLIDEVIDDGKPGLVAPIAEVTTPPKTRVWDQWKVEGIRKAKNLPSENKIVQNGSQKGQGSD
KERGTQQESEEPSHV