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Sed0023227 (gene) of Chayote v1 genome

Gene IDSed0023227
OrganismSechium edule (Chayote v1)
DescriptionTetratricopeptide-like helical
Genome locationLG07:17860942..17861172
RNA-Seq ExpressionSed0023227
SyntenySed0023227
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]6.5e-1064.62Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
        MSVSLEALAMAGIDSNEW MDAQ+W  N E+D  VPPHLLADE+DD+  + + ST +N  F   G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1471.43Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKSTANNDTFLAAG
        MSVSLEALAMAGI SNEWAMDA++W  N E++ DVPPHLLADEDDDD N+ ST +N +F  AG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKSTANNDTFLAAG
KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-1471.43Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKSTANNDTFLAAG
        MSVSLEALAMAGI SNEWAMDA++W  N E++ DVPPHLLADEDDDD N+ ST +N +F  AG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKSTANNDTFLAAG
TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]6.5e-1064.62Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
        MSVSLEALAMAGIDSNEW MDAQ+W  N E+D  VPPHLLADE+DD+  + + ST +N  F   G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]4.5e-1171.15Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKS
        MSVSLEALAMAGIDSNEWAMDA++W  N EM+ D+PPHLLADEDD++  + +
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKS
TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein4.5e-0970Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTN---IEMDYDVPPHLLADEDDDD
        M VSLEALAMAGIDSNEWAMDA++W TN   +E D  +PPHLLADED+++
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTN---IEMDYDVPPHLLADEDDDD
A0A0A0KWE7 Uncharacterized protein1.6e-0962.69Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQN----IKSTANNDTFLAAG
        MSVSLEALAMAGIDSNEWAMDA++W  N E+D  VPPHLLADE+DD+        ST +N  F   G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQN----IKSTANNDTFLAAG
A0A5A7TS68 Tetratricopeptide-like helical3.1e-1064.62Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
        MSVSLEALAMAGIDSNEW MDAQ+W  N E+D  VPPHLLADE+DD+  + + ST +N  F   G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
A0A5D3CZU0 Tetratricopeptide-like helical3.1e-1064.62Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
        MSVSLEALAMAGIDSNEW MDAQ+W  N E+D  VPPHLLADE+DD+  + + ST +N  F   G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDD--QNIKSTANNDTFLAAG
A0A6J1FX98 uncharacterized protein LOC1114478802.2e-1171.15Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKS
        MSVSLEALAMAGIDSNEWAMDA++W  N EM+ D+PPHLLADEDD++  + +
Subjt:  MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein2.6e-0437.74Show/hide
Query:  LEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKSTANND
        +EALAMAG+D  EW +  ++W     +   VP HLLAD+  +++  +   +ND
Subjt:  LEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKSTANND

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCGATGGCGGGAATTGATTCTAACGAGTGGGCTATGGATGCTCAACAATGGGGAACAAATATCGAAATGGATTACGATGTTCCGCC
GCATTTACTTGCTGACGAAGATGACGACGACCAAAACATAAAGAGTACCGCCAATAATGATACTTTTCTGGCAGCCGGAAAGATCGTGGTCGCTGCCGGAAAGATGCCGA
CCAAAACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCGATGGCGGGAATTGATTCTAACGAGTGGGCTATGGATGCTCAACAATGGGGAACAAATATCGAAATGGATTACGATGTTCCGCC
GCATTTACTTGCTGACGAAGATGACGACGACCAAAACATAAAGAGTACCGCCAATAATGATACTTTTCTGGCAGCCGGAAAGATCGTGGTCGCTGCCGGAAAGATGCCGA
CCAAAACGTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAQQWGTNIEMDYDVPPHLLADEDDDDQNIKSTANNDTFLAAGKIVVAAGKMPTKT