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Sed0023256 (gene) of Chayote v1 genome

Gene IDSed0023256
OrganismSechium edule (Chayote v1)
DescriptionCYSTM domain-containing protein
Genome locationLG04:44433888..44435500
RNA-Seq ExpressionSed0023256
SyntenySed0023256
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR028144 - Cysteine-rich transmembrane CYSTM domain
IPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589304.1 hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sororia]5.5e-2787.69Show/hide
Query:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWVLDCVF
Subjt:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

XP_022989101.1 cysteine-rich and transmembrane domain-containing protein B-like isoform X1 [Cucurbita maxima]5.5e-2787.69Show/hide
Query:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWVLDCVF
Subjt:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

XP_022989102.1 cysteine-rich and transmembrane domain-containing protein B-like isoform X2 [Cucurbita maxima]5.5e-2787.69Show/hide
Query:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWVLDCVF
Subjt:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

XP_023530417.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo]1.3e-2584.62Show/hide
Query:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        P  EEVK SNSGP+VAAPPPVGYP R+ PQYPHQT TPQTQ KGDGFWKGC AALCCCWVLDCVF
Subjt:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

XP_038888289.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida]1.4e-2277.78Show/hide
Query:  EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        ++ +  ++GP+VAAPPPVGYP RD PQYPHQT FTPQTQ +GDGFWKGCCAALCCCWVLDCVF
Subjt:  EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLDCVF

TrEMBL top hitse value%identityAlignment
A0A0A0K5N8 CYSTM domain-containing protein2.0e-2277.78Show/hide
Query:  EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        E+ K   SGP+VAAPPPVGYP RD PQYPHQT F  QTQ +GDGFWKGCCAALCCCWVLDC+F
Subjt:  EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLDCVF

A0A5A7USJ3 Cysteine-rich and transmembrane domain-containing protein A-like9.7e-2276.19Show/hide
Query:  EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        E+ K   SGP+VAAPPPVGYP RD PQYPHQT    QTQ +GDGFWKGCCAALCCCWVLDC+F
Subjt:  EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLDCVF

A0A6J1I2D9 cysteine-rich and transmembrane domain-containing protein WIH1-like1.5e-2285.45Show/hide
Query:  SGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        +GP+VAAPPPVGYP RD P+YPHQT TPQTQ +GDGFWKGCCAALCCCWVLDCVF
Subjt:  SGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

A0A6J1JEV3 cysteine-rich and transmembrane domain-containing protein B-like isoform X22.6e-2787.69Show/hide
Query:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWVLDCVF
Subjt:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

A0A6J1JJ37 cysteine-rich and transmembrane domain-containing protein B-like isoform X12.6e-2787.69Show/hide
Query:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWVLDCVF
Subjt:  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

SwissProt top hitse value%identityAlignment
Q8S8M0 Cysteine-rich and transmembrane domain-containing protein WIH26.8e-0451.06Show/hide
Query:  PPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        P  GYP   APQYP      Q Q    GF +GC AALCCC +LD  F
Subjt:  PPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

Arabidopsis top hitse value%identityAlignment
AT1G05340.1 unknown protein5.1e-0747.92Show/hide
Query:  PPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        PPP+GYP              +T+ KGDGF+KGC AA+CCC  LD  F
Subjt:  PPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

AT1G56060.1 unknown protein2.1e-0851.85Show/hide
Query:  FVAAPPPVGYPA--RDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        +V APPP+GYP   +D+PQ        Q++  G GF +GC AA+CCC VLDCVF
Subjt:  FVAAPPPVGYPA--RDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF

AT2G32190.1 unknown protein1.1e-0947.89Show/hide
Query:  SQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTP-QTQPKGDGFWKGCCAALCCCWVLDCVF
        SQ Q   A      ++GP++  PPP+GYP  D     H T  P +T+ KGDGF KGC AA+CCC VLD  F
Subjt:  SQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTP-QTQPKGDGFWKGCCAALCCCWVLDCVF

AT2G32210.1 unknown protein2.9e-1050.7Show/hide
Query:  SQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTF-TPQTQPKGDGFWKGCCAALCCCWVLDCVF
        SQ Q   A      ++GP+V APPP+GYP  D     H T  T +T+ KGDGF KGC AA+CCC VLD  F
Subjt:  SQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTF-TPQTQPKGDGFWKGCCAALCCCWVLDCVF

AT3G22240.1 unknown protein1.6e-1351.56Show/hide
Query:  TAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
        + E+   ++SGP+  +PPP+GYP RDA          +T+ KGDGFWKGCCAA+CCC VLD  F
Subjt:  TAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAATACCAAATTCCAACGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAGAGACGCTCCACAATA
CCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACTGTGTCTTCTAA
mRNA sequenceShow/hide mRNA sequence
TGCAACTTCTCATTTCCCACAAATTTATTGACATTATAAACTCTATAAACTCACATTAGTTCACCAATTCCATTCATTTCTTTTTGCTATTCTCAATTTCCCGTACGATC
TCCATTTTTGCCATCATGAGCCAATACCAAATTCCAACGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAG
AGACGCTCCACAATACCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACT
GTGTCTTCTAAGGCTGATGGCTAGCTATCTCCATTCTTGCTGAGACTGATTTTATTATTATTATTTTTTTTAGTTTTCATTTATTTATTTTAAATTTCTCTATGTTTGCT
ATTCTTTTAATGGTGAGGCCATTGTATTTTGGGCCTTTATTCTCTTGTTTTATTGCTATGAATTAGCTTGCCATATTCATTCTTATTCCAT
Protein sequenceShow/hide protein sequence
MSQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF