CuGenDBv2

Gene ID	Sed0023259
Organism	Sechium edule (Chayote v1)
Description	RRM domain-containing protein
Genome location	LG07:604745..608522
RNA-Seq Expression	Sed0023259
Synteny	Sed0023259
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0032991 - protein-containing complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-92

88.44

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVV++HFIPNFTEPIN+SQCALVEMKD KEA SVISVI QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPGRKI  VWLGKDDPDFEVAKKMK L Q+HVAEAAFLLKQQ+VEEEKLAKQQQ+ LK NYKKYEIVE VM DGTARRLAR YN+RVADD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-92

88.44

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVV++HFIPNFTEPIN+SQCALVEMKD KEA SVISVI QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPGRKI  VWLGKDDPDFEVAKKMK L Q+HVAEAAFLLKQQ+VEEEKLAKQQQ+ LK NYKKYEIVE VM DGTARRLAR YN+RVADD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

XP_022959585.1 uncharacterized protein LOC111460615 [Cucurbita moschata]

2.3e-91

87.44

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVV++HFIPNFTEPIN+SQCALVEMKD KEA SVIS+I QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPGRKI  VWLGKDDPDFEVAKKMK L Q+HVAEAAFLLKQQ+VEEEKLAKQQQ+ LK NYKKYEIVE VM DGTARRLAR YN+RVADD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

2.7e-92

87.94

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVV++HFIPNFTEPIN+SQCALVEMKD KEA SVISVI QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPGRKI  VWLGK+DPDFEVAKKMK L Q+HVAEAAFLLKQQ+VEEEKLAKQQQ+ LKGNYKKYEI+E VM DGTARRLAR YN+RVADD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

3.6e-92

88.44

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVV++HFIPNFTEPIN+SQCALVEMKD KEA SVISVI QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPGRKI  VWLGKDDPDFEVAKKMK L Q+HVAEAAFLLKQQ+VEEEKLAKQQQ+ LK NYKKYEIVE VM DGTARRLAR YN+RVADD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

4.9e-87

82.91

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVL+TALDQFGTVV++HFIPN+TEPIN+SQCALVEMKD KEA SVI+VI QFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRPVKPGRKI   WL  DDPDFEVA+++KRL++KHVAEAAFL+KQ M EEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLA+HYN+R++DD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

A0A1S3B3J3 uncharacterized protein LOC103485592

5.8e-88

83.42

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVVN+HFIPN+TEPIN+SQCALVEMKD KEA SVI+VI QFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRPVKPGRKI   WL  DDPDFEVA+++KRL +KHVAEAAFLLKQ + EEEKLAKQQQE L+GNYKKYEIV+SVMADGTARRLA++YN+RV+DD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

A0A6J1DB90 uncharacterized protein LOC111018537

1.6e-82

78.89

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV++TALDQFGTVV + FIPN+ EP+N+SQCALVEMKD KEA SVISVI +FPFM+SGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPG KI   WL ++DPDF+VAKKMK   +KH AE AFLLKQQ++EEEKLAKQQQEVLKGNYKK+EIVESVM DGTARRLA+ Y++RV DD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

A0A6J1H6P8 uncharacterized protein LOC111460615

1.1e-91

87.44

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVV++HFIPNFTEPIN+SQCALVEMKD KEA SVIS+I QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPGRKI  VWLGKDDPDFEVAKKMK L Q+HVAEAAFLLKQQ+VEEEKLAKQQQ+ LK NYKKYEIVE VM DGTARRLAR YN+RVADD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

A0A6J1KVQ1 uncharacterized protein LOC111498019

1.3e-92

87.94

Show/hide

Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVL+TALDQFGTVV++HFIPNFTEPIN+SQCALVEMKD KEA SVISVI QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD
         EMFDDRP+KPGRKI  VWLGK+DPDFEVAKKMK L Q+HVAEAAFLLKQQ+VEEEKLAKQQQ+ LKGNYKKYEI+E VM DGTARRLAR YN+RVADD
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

9.2e-46

46.67

Show/hide

Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  + FIPN+  P       LVEM++ +   +VIS + Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIR
          MF D+P KPGR ++  W+  +DPDF+ A+++KRLA+KH AE +F+LK  + E EKL+KQQ E    ++KK+E+++ ++ DG A++LA  Y+++
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

9.8e-48

47.18

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  + FIPN+  P       LVEM++ +   +VIS + Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAE

Query:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIR
          MF D+P KPGR ++  W+  +DPDF+ A+++KRLA+KH AE +F+LK+Q+ E EKL+KQQ E    ++KK+E+++ ++ DG A++LA  Y+++
Subjt:  EEMFDDRPVKPGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGATCAGCTACGGACGAGCAATATGCTAAGTTTGAGGAGAAGGTAAAACGGACTGTTTATGTTGATAATCTCTCTCCCCAAGTGACTGAGCCTGTCTTGAAAACTGC
TCTAGATCAGTTTGGGACTGTTGTCAATATCCATTTTATTCCAAACTTCACGGAGCCAATTAATACCTCTCAATGTGCTCTAGTGGAGATGAAGGATTTTAAGGAAGCAA
CATCCGTCATCTCGGTGATAGATCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGAGGGCGCGGCCTGCCGAGGAGGAGATGTTTGATGATCGCCCTGTAAAG
CCTGGTAGGAAGATTAAATGTGTTTGGTTGGGAAAGGATGATCCTGACTTTGAAGTTGCGAAGAAAATGAAGCGTCTTGCTCAGAAACATGTAGCTGAAGCTGCATTCTT
GCTGAAGCAACAAATGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGTACTGAAAGGAAACTACAAGAAATATGAGATTGTTGAAAGTGTAATGGCTGATGGAA
CTGCCCGCAGGTTAGCAAGGCATTATAATATCCGAGTTGCAGATGATTAA

mRNA sequence

Show/hide mRNA sequence

TTCACCATTCACCATTCACCATTCTCCACTCACCTTTTTTCTCATAAAACTCTTCTCCAATTCTCAACGCAGCTCTACTTCTACTGGCTCATGCCCCTCGCTCACCGTTG
ATCTTTTCGTTTCTCCTCTTTGGACTGATCCTTTTTTATCATTCCACATGGGATCAGCTACGGACGAGCAATATGCTAAGTTTGAGGAGAAGGTAAAACGGACTGTTTAT
GTTGATAATCTCTCTCCCCAAGTGACTGAGCCTGTCTTGAAAACTGCTCTAGATCAGTTTGGGACTGTTGTCAATATCCATTTTATTCCAAACTTCACGGAGCCAATTAA
TACCTCTCAATGTGCTCTAGTGGAGATGAAGGATTTTAAGGAAGCAACATCCGTCATCTCGGTGATAGATCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGA
GGGCGCGGCCTGCCGAGGAGGAGATGTTTGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAAATGTGTTTGGTTGGGAAAGGATGATCCTGACTTTGAAGTTGCGAAG
AAAATGAAGCGTCTTGCTCAGAAACATGTAGCTGAAGCTGCATTCTTGCTGAAGCAACAAATGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGTACTGAAAGG
AAACTACAAGAAATATGAGATTGTTGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAGGCATTATAATATCCGAGTTGCAGATGATTAATTGAAACCTTTGA
AGCTTTATTTACACTCCTAATTTCCCTGATCTCTCCATGTAAATTTTGTACCAATTATCGTTTGTATGGCCTTAATATAGATTAATTAGACACTTGTTTTGTGATTTAGA
GGGAGAAAGATAGCTAATTAGTGTGTAATACTCATTTTCTCTAACTTGGTACCTTTTTTCTATCGATTTTATGAAAAATTTAACCACTTGGTTGGCAA

Protein sequence

Show/hide protein sequence

MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLKTALDQFGTVVNIHFIPNFTEPINTSQCALVEMKDFKEATSVISVIDQFPFMMSGMPRPVRARPAEEEMFDDRPVK
PGRKIKCVWLGKDDPDFEVAKKMKRLAQKHVAEAAFLLKQQMVEEEKLAKQQQEVLKGNYKKYEIVESVMADGTARRLARHYNIRVADD

Sed0023259 (gene) of Chayote v1 genome