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Sed0023381 (gene) of Chayote v1 genome

Gene IDSed0023381
OrganismSechium edule (Chayote v1)
DescriptionF-box/LRR-repeat protein
Genome locationLG01:68295929..68296335
RNA-Seq ExpressionSed0023381
SyntenySed0023381
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042782.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]9.6e-0852.33Show/hide
Query:  MASQN--PISPFLFIFAILLTAAAISAAR-------LPENDNSFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN
        MASQN  P S FLF+F ILLT   + AAR        PEND S    +T+T   +QPPA V+D+        SLRKVPAGPNPLHN
Subjt:  MASQN--PISPFLFIFAILLTAAAISAAR-------LPENDNSFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN

KAG6579492.1 hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sororia]7.6e-0550Show/hide
Query:  MASQNPISPF-LFIFAILLTAAA-ISAARL-------PENDNSFHTASTSTLVLSQPPATVEDEA-------SLRKVPAGPNPLHN
        MASQNPI+   LF+F ILLT  A +SA R        PEND+      T++    QPP TVE++A       S RKVPAGPNPLHN
Subjt:  MASQNPISPF-LFIFAILLTAAA-ISAARL-------PENDNSFHTASTSTLVLSQPPATVEDEA-------SLRKVPAGPNPLHN

KGN50125.1 hypothetical protein Csa_000058 [Cucumis sativus]1.5e-0853.93Show/hide
Query:  MASQNPISP---FLFIFAILLTAAA-ISAAR-------LPENDN-SFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN
        MASQN I P   FLF+F ILLT    + AAR        PEND+ S H  +TST   +QPPA VED+        SLRKVPAGPNPLHN
Subjt:  MASQNPISP---FLFIFAILLTAAA-ISAAR-------LPENDN-SFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN

TrEMBL top hitse value%identityAlignment
A0A0A0KKA9 Uncharacterized protein7.1e-0953.93Show/hide
Query:  MASQNPISP---FLFIFAILLTAAA-ISAAR-------LPENDN-SFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN
        MASQN I P   FLF+F ILLT    + AAR        PEND+ S H  +TST   +QPPA VED+        SLRKVPAGPNPLHN
Subjt:  MASQNPISP---FLFIFAILLTAAA-ISAAR-------LPENDN-SFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN

A0A5A7THA6 F-box/LRR-repeat protein4.6e-0852.33Show/hide
Query:  MASQN--PISPFLFIFAILLTAAAISAAR-------LPENDNSFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN
        MASQN  P S FLF+F ILLT   + AAR        PEND S    +T+T   +QPPA V+D+        SLRKVPAGPNPLHN
Subjt:  MASQN--PISPFLFIFAILLTAAAISAAR-------LPENDNSFHTASTSTLVLSQPPATVEDE-------ASLRKVPAGPNPLHN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTCAAAACCCAATTTCCCCATTTCTCTTCATCTTCGCAATTCTCCTCACCGCCGCCGCCATCTCCGCCGCACGGCTGCCGGAAAATGATAATTCTTTCCACAC
AGCCTCCACTTCAACACTCGTATTATCACAGCCGCCGGCCACCGTGGAGGATGAAGCTTCACTCCGCAAAGTCCCCGCCGGTCCGAACCCACTCCATAACTAA
mRNA sequenceShow/hide mRNA sequence
ATTTTCCATTTCTCTCTCTCACACACAAACAATGGCTTCTCAAAACCCAATTTCCCCATTTCTCTTCATCTTCGCAATTCTCCTCACCGCCGCCGCCATCTCCGCCGCAC
GGCTGCCGGAAAATGATAATTCTTTCCACACAGCCTCCACTTCAACACTCGTATTATCACAGCCGCCGGCCACCGTGGAGGATGAAGCTTCACTCCGCAAAGTCCCCGCC
GGTCCGAACCCACTCCATAACTAAACCGGCCAACCCCGGATCTCGGACCGGATCCAAAAAAAATATATTAATAATTCAACACTCTCTCCGTAACAATTCTTCAATACAGG
TTCGAAATACAATTTTCGAATTATCTTTTGCCAATTTAGCATCCCAACAAAACTTTTTGCAGCCTATTATAGGGTCA
Protein sequenceShow/hide protein sequence
MASQNPISPFLFIFAILLTAAAISAARLPENDNSFHTASTSTLVLSQPPATVEDEASLRKVPAGPNPLHN