CuGenDBv2

Gene ID	Sed0023384
Organism	Sechium edule (Chayote v1)
Description	arabinogalactan peptide 23-like
Genome location	LG04:38257847..38259215
RNA-Seq Expression	Sed0023384
Synteny	Sed0023384
Gene Ontology terms	GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0031225 - anchored component of membrane (cellular component)
InterPro domains	IPR044702 - Arabinogalactan protein 23/40

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7018086.1 hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-08

79.63

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSS--AATLPAVGSLIGTSLLSLA
        MKKIACAVLFAAATV+A VA+DEA APAPGPSS  AA LPA+GS+IG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSS--AATLPAVGSLIGTSLLSLA

KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-08

75.93

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA
        MKKI CA+LFAAATV+A VA+DEA+APAPGP+S AT  LPA+GSLIG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA

XP_022932375.1 arabinogalactan peptide 23-like [Cucurbita moschata]

8.3e-10

83.33

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA
        MKKI CAVLFAAATVTAAVA +EASAPAPGP+SAAT  LPA+GSLIG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA

XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]

2.7e-08

79.63

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSS--AATLPAVGSLIGTSLLSLA
        MKKIACAVLFAAATV+A VA+DEA APAPGPSS  AA LPA+GS IG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSS--AATLPAVGSLIGTSLLSLA

XP_038905644.1 arabinogalactan protein 23-like [Benincasa hispida]

9.1e-09

79.63

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA
        MKKIACAVLFAAATV+AAVA+DEA APAPGPSS A   LPA+GS+IG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U280 Arabinogalactan peptide 23

1.7e-08

75.93

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA
        MKKIACA+LFAAATV+AAVA D+A APAPGPSS A   LPA+GSL+G SLLS A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA

A0A6J1F209 arabinogalactan peptide 23-like

4.0e-10

83.33

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA
        MKKI CAVLFAAATVTAAVA +EASAPAPGP+SAAT  LPA+GSLIG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA

A0A6J1HQG2 arabinogalactan peptide 23-like

4.0e-10

83.33

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA
        MKKI CAVLFAAATVTAAVA +EASAPAPGP+SAAT  LPA+GSLIG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA

A0A6J1J6Y9 arabinogalactan peptide 23-like

1.3e-08

79.63

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSS--AATLPAVGSLIGTSLLSLA
        MKKIACAVLFAAATV+A VA+DEA APAPGPSS  AA LPA+GS IG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSS--AATLPAVGSLIGTSLLSLA

A0A6J1K873 arabinogalactan peptide 23-like

2.2e-08

74.07

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA
        M KI CA+LFAAATV+A VA+DEA+APAPGP+S AT  LPA+GSLIG SLLS+A
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSLA

SwissProt top hits

e value

%identity

Alignment

Q8S2W4 Arabinogalactan protein 23

9.5e-09

67.92

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSL
        MKKIAC VLFAAA++TA +A +E  APAPGP+SAA+  LPA+GSL+G SL+SL
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSL

Arabidopsis top hits

e value

%identity

Alignment

AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)

3.5e-06

57.41

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPS---SAATLPAVGSLIGTSLLSL
        MKKIAC V+FAAA++TA +A  E  APAPGP+   ++  +PA+GSL+G SL+SL
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPS---SAATLPAVGSLIGTSLLSL

AT3G57690.1 arabinogalactan protein 23

6.7e-10

67.92

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Query:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSL
        MKKIAC VLFAAA++TA +A +E  APAPGP+SAA+  LPA+GSL+G SL+SL
Subjt:  MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAAT--LPAVGSLIGTSLLSL

Sequences

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CDS sequence

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ATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCCGCCGCCACCGTCACTGCCGCCGTGGCTAACGATGAGGCGTCGGCTCCGGCACCTGGACCAAGCAGCGCCGCCACCCT
CCCGGCCGTCGGATCTCTCATCGGCACTTCCTTGCTCTCCCTCGCTGAACTCGACAGTCAAGTATCAAAGATTAAAACATTTTATGTGTCAAGGATCAAGATTGAAGACA
TTTAG

mRNA sequence

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Protein sequence

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MKKIACAVLFAAATVTAAVANDEASAPAPGPSSAATLPAVGSLIGTSLLSLAELDSQVSKIKTFYVSRIKIEDI

Sed0023384 (gene) of Chayote v1 genome