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Sed0023402 (gene) of Chayote v1 genome

Gene IDSed0023402
OrganismSechium edule (Chayote v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationLG12:33546589..33549154
RNA-Seq ExpressionSed0023402
SyntenySed0023402
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021772.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-4675.2Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ID+K  I+  GIRDGD LHFVNRVA
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

XP_022927502.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]2.4e-4675.2Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ID+K  I+  GIRDGD LHFVNRVA
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

XP_022973901.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]6.4e-4775.2Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA LR+AVESVFC MLMN EDVKISWPHVW HFCLCY+ YKL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ID+K  I+  GIRDGD LHFVNR+A
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]6.4e-4776Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        MS +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ID+K  I+  GIRDGD LHFVNRVA
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

XP_023531557.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo]6.4e-4776Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        MS +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ID+K  I+  GIRDGD LHFVNRVA
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein2.0e-4676.86Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        MS +EP  P+SCCIS RF S S RRSLRY RLPP+LL LSVLKLDGSSF+VQV RTATVA +RDAVESVFCEM MN+ED  ISWPHVWGHFCLCY+ +KL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFV
        +DDK  IQ  GIRDGDQLHFV
Subjt:  IDDKLYIQLLGIRDGDQLHFV

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X23.4e-4676.03Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        MS +EP  P+SCCIS RF + S RRSLRY RLPP+LL LSVLKLDGSSF+VQV RTATVA +RDAVESVFCEM MN+ED  ISWPHVWGHFCLCY+ +KL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFV
        +DDK  IQ  GIRDGDQLHFV
Subjt:  IDDKLYIQLLGIRDGDQLHFV

A0A6J1CUD1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like2.6e-4673.44Show/hide
Query:  MSPVEPDFPNSC---CISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYER
        MS VE DFP SC    +S R RS S RRSL Y+RLPP+LL LSVLKLDGSSF+VQVAR ATVA+LRDAVESVFC+++MN+ED KISWPHVWGHFCLCY+ 
Subjt:  MSPVEPDFPNSC---CISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYER

Query:  YKLIDDKLYIQLLGIRDGDQLHFVNRVA
        +KLI+DK +I+  GIRDG+QLHFVNRVA
Subjt:  YKLIDDKLYIQLLGIRDGDQLHFVNRVA

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like1.2e-4675.2Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA LR+AVESVFC M MN EDVKISWPHVW HFCLCY+ YKL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ID+K  I+  GIRDGD LHFVNRVA
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

A0A6J1I9W9 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like3.1e-4775.2Show/hide
Query:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        M  +EP+ P+SCCIS RFRS S RRSLRY+RLP  LL LSVLKLDGSSF+VQVAR A+VA LR+AVESVFC MLMN EDVKISWPHVW HFCLCY+ YKL
Subjt:  MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ID+K  I+  GIRDGD LHFVNR+A
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

SwissProt top hitse value%identityAlignment
Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.7e-1042.86Show/hide
Query:  LSVLKLDGSSFQVQVARTATVANLRDAVESVFCEM-LMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFV
        LSV+KLDGSS  V V  +AT+ +L+  ++    EM   N     ISW HVW +FCL     KL+DD   +Q +GIR+  Q+ F+
Subjt:  LSVLKLDGSSFQVQVARTATVANLRDAVESVFCEM-LMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFV

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein8.2e-0528.57Show/hide
Query:  ELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVK-ISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRV
        + + + V K+DG    V V ++ATV +L+ A++         E  ++ ISW +VW  + L     KL +D+  ++  GIR+ D++ F+ ++
Subjt:  ELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVK-ISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRV

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein6.9e-2348Show/hide
Query:  SPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPE-LLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL
        S ++P F +S  ++    S S RRS  Y +LPP+  + LSV+KL+GS F V+VA+  +VA L+ AVE VF    + E    ISW HVWGHFCLCY   +L
Subjt:  SPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPE-LLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKL

Query:  IDDKLYIQLLGIRDGDQLHFVNRVA
        ++DK  I+ LG+ DGDQLHFV  ++
Subjt:  IDDKLYIQLLGIRDGDQLHFVNRVA

AT3G07860.1 Ubiquitin-like superfamily protein1.2e-1142.86Show/hide
Query:  LSVLKLDGSSFQVQVARTATVANLRDAVESVFCEM-LMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFV
        LSV+KLDGSS  V V  +AT+ +L+  ++    EM   N     ISW HVW +FCL     KL+DD   +Q +GIR+  Q+ F+
Subjt:  LSVLKLDGSSFQVQVARTATVANLRDAVESVFCEM-LMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFV

AT4G32270.1 Ubiquitin-like superfamily protein2.1e-2450.98Show/hide
Query:  RRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNR
        RRS  Y ++P E + L+VLKLDGSSF +QV +TATV  L+ AVE+ F  + ++    KISWPHVWG FCL YE  +LI++  Y+   GI+DGDQL F+  
Subjt:  RRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNR

Query:  VA
        ++
Subjt:  VA

AT4G32270.2 Ubiquitin-like superfamily protein1.2e-1950Show/hide
Query:  LPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRVA
        +P E + L+VLKLDGSSF   V +TATV  L+ AVE+ F  + ++    KISWPHVWG FCL YE  +LI++  Y+   GI+DGDQL F+  ++
Subjt:  LPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNRVA

AT5G25340.1 Ubiquitin-like superfamily protein1.7e-2150Show/hide
Query:  RRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNR
        RR+  Y +LP E + LSVLKLDGSSF V V  +ATV +L+ A+E+ F   +  +   KISW HVWGHFCLC+   KLI D   I   G++DGD++ F N 
Subjt:  RRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLLGIRDGDQLHFVNR

Query:  VA
        V+
Subjt:  VA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCTGTTGAGCCGGATTTTCCCAATTCGTGCTGTATCTCTCGTCGGTTTCGGAGCTACAGTCTTCGCCGGAGTCTTCGCTACAAGAGGCTTCCGCCGGAGCTCCT
CTGCCTCTCCGTCTTGAAATTGGACGGTTCCTCCTTCCAGGTGCAAGTTGCAAGGACGGCGACGGTGGCAAATCTTAGAGACGCAGTGGAGAGTGTTTTCTGCGAAATGT
TGATGAATGAAGAAGATGTCAAGATTTCATGGCCACATGTGTGGGGCCATTTTTGCCTATGCTATGAACGTTACAAGCTTATCGACGACAAATTATATATCCAATTACTT
GGAATTAGGGATGGTGATCAGCTGCATTTTGTGAACCGTGTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCTGTTGAGCCGGATTTTCCCAATTCGTGCTGTATCTCTCGTCGGTTTCGGAGCTACAGTCTTCGCCGGAGTCTTCGCTACAAGAGGCTTCCGCCGGAGCTCCT
CTGCCTCTCCGTCTTGAAATTGGACGGTTCCTCCTTCCAGGTGCAAGTTGCAAGGACGGCGACGGTGGCAAATCTTAGAGACGCAGTGGAGAGTGTTTTCTGCGAAATGT
TGATGAATGAAGAAGATGTCAAGATTTCATGGCCACATGTGTGGGGCCATTTTTGCCTATGCTATGAACGTTACAAGCTTATCGACGACAAATTATATATCCAATTACTT
GGAATTAGGGATGGTGATCAGCTGCATTTTGTGAACCGTGTAGCTTAA
Protein sequenceShow/hide protein sequence
MSPVEPDFPNSCCISRRFRSYSLRRSLRYKRLPPELLCLSVLKLDGSSFQVQVARTATVANLRDAVESVFCEMLMNEEDVKISWPHVWGHFCLCYERYKLIDDKLYIQLL
GIRDGDQLHFVNRVA