CuGenDBv2

Gene ID	Sed0023443
Organism	Sechium edule (Chayote v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	LG01:20669120..20669365
RNA-Seq Expression	Sed0023443
Synteny	Sed0023443
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0008289 - lipid binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR002379 - V-ATPase proteolipid subunit C-like domain IPR005953 - ATP synthase, F0 complex, subunit C, bacterial/chloroplast IPR020537 - ATP synthase, F0 complex, subunit C, DCCD-binding site IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

NP_783219.1 ATP synthase CF0 C subunit [Atropa belladonna]

3.9e-29

93.83

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP ++AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

YP_008474550.1 ATP synthase CF0 subunit III [Marsilea crenata]

8.7e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

YP_009526751.1 AtpH [Dipsacus japonicus]

6.7e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

YP_009913652.1 ATP synthase CF0 C subunit [Luffa acutangula]

6.7e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

YP_010043963.1 ATP synthase CF0 C subunit [Securigera varia]

6.7e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

TrEMBL top hits

e value

%identity

Alignment

A0A385JPF9 ATP synthase subunit c, chloroplastic

3.2e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

A0A385JPV1 ATP synthase subunit c, chloroplastic

3.2e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

A0A5P8FW88 ATP synthase subunit c, chloroplastic

3.2e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

A0A5P8FWS3 ATP synthase subunit c, chloroplastic

3.2e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

A0A7D5XZ46 ATP synthase subunit 9, mitochondrial

3.2e-29

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

SwissProt top hits

e value

%identity

Alignment

A4QJA2 ATP synthase subunit c, chloroplastic

1.5e-31

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

Q3V547 ATP synthase subunit c, chloroplastic

1.5e-31

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

Q4FGF2 ATP synthase subunit c, chloroplastic

1.5e-31

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

Q85FN2 ATP synthase subunit c, chloroplastic

1.5e-31

95.06

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP I AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

Q8RU61 ATP synthase subunit c, chloroplastic

5.1e-32

93.83

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Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP ++AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

1.4e-32

93.83

Show/hide

Query:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV
        MNP + AAS+IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSL FMEALTIYGLVVALALLFANPFV
Subjt:  MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

Sequences

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CDS sequence

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ATGAATCCACCGATTTATGCTGCTTCCATTATTGCTGCTGGGTTGGCTGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGA
AGGGATCGCGAGACAACCCGAGGCAGAGGGAAAAATTCGAGGTACTTTATTGCTTAGTCTGGATTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCAC
TTTTGTTTGCGAATCCTTTTGTTTAA

mRNA sequence

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Protein sequence

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MNPPIYAASIIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLDFMEALTIYGLVVALALLFANPFV

Sed0023443 (gene) of Chayote v1 genome