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Sed0023448 (gene) of Chayote v1 genome

Gene IDSed0023448
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG08:796229..796810
RNA-Seq ExpressionSed0023448
SyntenySed0023448
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG57364.1 hypothetical protein EZV62_018677 [Acer yangbiense]1.7e-1332.47Show/hide
Query:  MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRT
        +ER  W+ P   + K+NTDA +     + G G+I+R                 V  + AEA+A+  G+  AV+ GF  + VE+DA  V   + K   S  
Subjt:  MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRT

Query:  EVGFIIDETLTLV-AALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP
        E G +I + L+L+ ++L  +S ++ +R+SNG+AH LA +AA    +  WM   P
Subjt:  EVGFIIDETLTLV-AALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP

XP_021744937.1 uncharacterized protein LOC110710901 [Chenopodium quinoa]5.6e-1232.45Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI
        W+PP + ++K+N+DA ++  +   G G ++R     VV S           ++ EALA++  + +A++ GFR V +ETD  ++   L KC    T  G I
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI

Query:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENL
        + + L L  A   VSFS+  R  N +AH LA++         WMED P ++
Subjt:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENL

XP_023872391.1 uncharacterized protein LOC111985003 [Quercus suber]3.3e-1228.57Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEI----------------AEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI
        W PPR    KIN D  ++ ++  CG+GV++R  +  +                 EALAVQEG+ +A DLG +++E+E+D+  V + L K +     +  +
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEI----------------AEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI

Query:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMTN
        I+     +        +   R++N  AH LAR A+       W+ED+P  + E  + +++N
Subjt:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMTN

XP_023880912.1 uncharacterized protein LOC111993298 [Quercus suber]2.5e-1232.32Show/hide
Query:  ERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTE
        E   W PP D + K N D  ++ ++   GIGVIVR                +   E+ EALA +      V+LG    E E D+  V   LK    + + 
Subjt:  ERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTE

Query:  VGFIIDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMT
        +G II +TL++V +L   SFS   R  N +AH LA+ A        WME VP ++    I + T
Subjt:  VGFIIDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMT

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]7.8e-1434.46Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI
        WRPP     K+N DA I+  + R G G ++R                V  S+ AE LA ++ +  AVD GF E+ +E D+  V   L       + VG +
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI

Query:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP
        + +   L++ L +VSFSW  RD N +AH LA+ A     +  WMED P
Subjt:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP

TrEMBL top hitse value%identityAlignment
A0A2N9EK22 Uncharacterized protein1.7e-1435.26Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI
        W+PP  H  KIN D  ++ + N  GIGV+VR     V+ S           E  EA A +  V    ++G +E E E D+  + A L       T  G +
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI

Query:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI
        I +  +L  AL    F+   R  NGLAH LARMA    +   WMEDVP  L++ Y+
Subjt:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI

A0A2N9EQW7 Reverse transcriptase domain-containing protein1.1e-1334.64Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI
        W+PP  H  KIN D  ++ + N  GIG++VR     V+ S           E  EA A +  V    ++G +E E E D+  + A L       T  G +
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI

Query:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLRE
        I +  +L  AL    F+   R  NGLAH LARMA    +   WMEDVP  L++
Subjt:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLRE

A0A2N9G3I8 Reverse transcriptase domain-containing protein1.4e-1332.28Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEIAEAL------------------AVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVG
        W+PP  H  KIN D  ++ + N  GIGV+VR     +  +L                  A +  V    ++G +E E E D+  + A L       T  G
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEIAEAL------------------AVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVG

Query:  FIIDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI
         +I +  +L  AL    F+   R  NGLAH LARMA    +   WMEDVP  L++ Y+
Subjt:  FIIDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI

A0A2N9GYK3 Uncharacterized protein2.2e-1435.26Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI
        W+PP  H  KIN D  ++ + N  GIGV+VR     V+ S           E  EA A +  V    ++G +E E E D+  + A L       T  G +
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI

Query:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI
        I +  +L  AL    F+   R  NGLAH LARMA    +   WMEDVP  L++ Y+
Subjt:  IDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI

A0A5C7HKD5 Uncharacterized protein8.4e-1432.47Show/hide
Query:  MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRT
        +ER  W+ P   + K+NTDA +     + G G+I+R                 V  + AEA+A+  G+  AV+ GF  + VE+DA  V   + K   S  
Subjt:  MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRT

Query:  EVGFIIDETLTLV-AALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP
        E G +I + L+L+ ++L  +S ++ +R+SNG+AH LA +AA    +  WM   P
Subjt:  EVGFIIDETLTLV-AALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.7e-0428.03Show/hide
Query:  WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEI----------------AEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI
        WRPP    +K NTDAT      RCGIG ++R    E+                AE  A++  V       +  V  E+D+  +   L   E     +   
Subjt:  WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEI----------------AEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFI

Query:  IDETLTLVAALTKVSFSWCARDSNGLAHHLAR
        I +   L++  T+V F +  R+ N LA  +AR
Subjt:  IDETLTLVAALTKVSFSWCARDSNGLAHHLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGGAAAAATTGGCGACCACCAAGGGACCATATATTGAAAATCAATACTGATGCAACAATTTATCTTCAAGCTAATAGATGTGGAATTGGGGTGATTGTGCGAGT
TGTGGATTCAGAAATTGCCGAAGCTTTAGCAGTTCAAGAGGGAGTAGCAATGGCTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACGGATGCATCTCGTGTTGCTG
CTTTTCTTAAAAAGTGTGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGACCTTAGTTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGA
GATTCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAAAGGTTTTGAATGCTAGTTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATACTTGA
AATGACGAATTCTCTTGTCCAAGAAAGGGAGGGAGTCTCCTGCCTTAATCTTTTGTTACTGTGTACTTCAAAAAAAAAAAAAGTTAAATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGGAAAAATTGGCGACCACCAAGGGACCATATATTGAAAATCAATACTGATGCAACAATTTATCTTCAAGCTAATAGATGTGGAATTGGGGTGATTGTGCGAGT
TGTGGATTCAGAAATTGCCGAAGCTTTAGCAGTTCAAGAGGGAGTAGCAATGGCTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACGGATGCATCTCGTGTTGCTG
CTTTTCTTAAAAAGTGTGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGACCTTAGTTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGA
GATTCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAAAGGTTTTGAATGCTAGTTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATACTTGA
AATGACGAATTCTCTTGTCCAAGAAAGGGAGGGAGTCTCCTGCCTTAATCTTTTGTTACTGTGTACTTCAAAAAAAAAAAAAGTTAAATGTTAA
Protein sequenceShow/hide protein sequence
MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCAR
DSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMTNSLVQEREGVSCLNLLLLCTSKKKKVKC