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Sed0023495 (gene) of Chayote v1 genome

Gene IDSed0023495
OrganismSechium edule (Chayote v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationLG04:26102803..26104834
RNA-Seq ExpressionSed0023495
SyntenySed0023495
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-1747.86Show/hide
Query:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN
        PS   E N   + ++ CQIC    H A DCYNRM+F+YQGRHPPSQLA M    T  S     S + T   N WL D+GCN H+T+++ANL+ S  Y G 
Subjt:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN

Query:  ERVTVSDRQALSIAHQG
        E VTV + Q L+I + G
Subjt:  ERVTVSDRQALSIAHQG
KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]5.4e-1741.6Show/hide
Query:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS
        S +P      Q S  + +NS+ V CQIC    H+A DCY+RMDF+YQG+ P  QL  M A  T  +  D S       PN W +DTG   H+T+D+ANL+
Subjt:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS

Query:  HSTTYPGNERVTVSDRQALSIAHQG
            Y G++ +T+++ QAL I+H G
Subjt:  HSTTYPGNERVTVSDRQALSIAHQG
KAA8518236.1 hypothetical protein F0562_015710 [Nyssa sinensis]5.4e-1743.48Show/hide
Query:  QPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGNER
        Q S  + +NS  V CQIC    H+A DCY+R+DF+YQG+HP  QL  M   V   +  D+S     T+PN W +DTG   H+T+D+ANL+    Y G++ 
Subjt:  QPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGNER

Query:  VTVSDRQALSIAHQG
        + V++ QAL I+H G
Subjt:  VTVSDRQALSIAHQG
KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]5.4e-1741.6Show/hide
Query:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS
        S +P      Q S  + +NS+ V CQIC    H+A DCY+RMDF+YQG+ P  QL  M A  T  +  D S       PN W +DTG   H+T+D+ANL+
Subjt:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS

Query:  HSTTYPGNERVTVSDRQALSIAHQG
            Y G++ +T+++ QAL I+H G
Subjt:  HSTTYPGNERVTVSDRQALSIAHQG
TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-1747.86Show/hide
Query:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN
        PS   E N   + ++ CQIC    H A DCYNRM+F+YQGRHPPSQLA M    T  S     S + T   N WL D+GCN H+T+++ANL+ S  Y G 
Subjt:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN

Query:  ERVTVSDRQALSIAHQG
        E VTV + Q L+I + G
Subjt:  ERVTVSDRQALSIAHQG
TrEMBL top hitse value%identityAlignment
A0A5A7U7J4 Putative mitochondrial protein5.2e-1847.86Show/hide
Query:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN
        PS   E N   + ++ CQIC    H A DCYNRM+F+YQGRHPPSQLA M    T  S     S + T   N WL D+GCN H+T+++ANL+ S  Y G 
Subjt:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN

Query:  ERVTVSDRQALSIAHQG
        E VTV + Q L+I + G
Subjt:  ERVTVSDRQALSIAHQG
A0A5D3C579 Putative mitochondrial protein5.2e-1847.86Show/hide
Query:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN
        PS   E N   + ++ CQIC    H A DCYNRM+F+YQGRHPPSQLA M    T  S     S + T   N WL D+GCN H+T+++ANL+ S  Y G 
Subjt:  PSENQEDN---SNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN

Query:  ERVTVSDRQALSIAHQG
        E VTV + Q L+I + G
Subjt:  ERVTVSDRQALSIAHQG
A0A5J4ZKU4 Retrotran_gag_3 domain-containing protein2.6e-1743.48Show/hide
Query:  QPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGNER
        Q S  + +NS  V CQIC    H+A DCY+R+DF+YQG+HP  QL  M   V   +  D+S     T+PN W +DTG   H+T+D+ANL+    Y G++ 
Subjt:  QPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGNER

Query:  VTVSDRQALSIAHQG
        + V++ QAL I+H G
Subjt:  VTVSDRQALSIAHQG
A0A5J5A0G3 Retrotran_gag_3 domain-containing protein2.6e-1741.6Show/hide
Query:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS
        S +P      Q S  + +NS+ V CQIC    H+A DCY+RMDF+YQG+ P  QL  M A  T  +  D S       PN W +DTG   H+T+D+ANL+
Subjt:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS

Query:  HSTTYPGNERVTVSDRQALSIAHQG
            Y G++ +T+++ QAL I+H G
Subjt:  HSTTYPGNERVTVSDRQALSIAHQG
A0A5J5B049 Retrotran_gag_3 domain-containing protein2.6e-1741.6Show/hide
Query:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS
        S +P      Q S  + +NS+ V CQIC    H+A DCY+RMDF+YQG+ P  QL  M A  T  +  D S       PN W +DTG   H+T+D+ANL+
Subjt:  STIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLS

Query:  HSTTYPGNERVTVSDRQALSIAHQG
            Y G++ +T+++ QAL I+H G
Subjt:  HSTTYPGNERVTVSDRQALSIAHQG
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.9e-0531.15Show/hide
Query:  QPSENQEDNSNKV-----HCQICKYFWHNAPDCYNRMDF--AYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHST
        Q S N   N+N+       CQIC    H+A  C     F  +   + PPS         T    R   +  +    N WL D+G   H+TSD  NLS   
Subjt:  QPSENQEDNSNKV-----HCQICKYFWHNAPDCYNRMDF--AYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHST

Query:  TYPGNERVTVSDRQALSIAHQG
         Y G + V V+D   + I+H G
Subjt:  TYPGNERVTVSDRQALSIAHQG
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.9e-0428.32Show/hide
Query:  SENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGNERVT
        S+N++       CQIC    H+A  C     F        S      +  T    R   + ++  + N WL D+G   H+TSD  NLS    Y G + V 
Subjt:  SENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGNERVT

Query:  VSDRQALSIAHQG
        ++D   + I H G
Subjt:  VSDRQALSIAHQG
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCTACAATCCCTATTTTGCATGTTCCTATACAACCTAGTGAAAATCAAGAAGATAATTCGAACAAAGTTCACTGTCAGATCTGCAAGTATTTTTGGCATAATGC
TCCAGATTGTTACAATCGTATGGATTTTGCATATCAGGGTCGTCATCCTCCTTCTCAGCTTGCAACAATGGTTGCAGTGGTAACATCTACATCATCCCGAGATGCGTCTT
CGTTTGACACTACTACTGATCCAAATATCTGGTTATCAGACACAGGCTGCAACGCTCATCTCACTAGTGATGTTGCCAATCTCAGTCATTCGACAACATATCCGGGCAAT
GAACGTGTAACAGTTAGCGACAGACAGGCTCTTTCCATAGCTCATCAAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATTGTCTTCATGGTATCAGATTTCCCTTGACAAACGTCACCCTGATCCTGGTGCTGCATCTTTCCCCCTTTGTCTTCACTCGCTCTCAAGAACAGTCATCTTCTTGTGAA
ACCCATTTTCTTTGAGAATTCGTTGTCGATTCGAATTCATTGTCTTCATCATCCTCTACAAATCGTTCCTAAAATCATGGATTCAACTTTTTCAACAGTCAATTTCTCGA
TCTATTTTCTTACCAACATATGCAATCTTGTATCGGTTCGTCTTGATTCGACCAACTACATTCTTTGAAAGTTCCAAATCTCACCTCTTCTATGCGAGCACAAACTCTTT
GGGTTCATCGATGGCACTATTCCTACTCCAGACAAAACTATTCGATCAGAGAATCAGTCGAATTCCTGCGTATGAATCCTAGTATGAGAAAGATCAAGCTGTCTTCACGC
TTCTGAATGCGACGTTGTCTCAAAACGTTCTGTCTTACGCCATAGGTTGTACTACAGCGAAAGAAATAGTTTTCATCTTCTAATCGTTTGCACATTGCAAGTCTTAAAAC
CGAGCTGCAGAGTATTTTCAAGAAATCTGAAGAATCAATTGATCAATATACTCAGCAAATCAAGAATATTGTTCATCGTTTGGCTGCAGTTTCTGTTGCTATCGATGATT
AAGATGTTGTCATCTACACAGTCAATGGTCTCTCAGTAGATTACAATATATTCAAGACTTCGCTCCAAACTTCAGCCCAGTCTATCTCGTTTGAGGAACTGAAGATTCTT
CTCAAAACTGAAGAGTTATTCTTGATCAACAGGAAAAAACTGATATTACTTATTCTTTCTCCGATCTTGCTGACTGCCAATGTTACCAATGACAGAGGCTTTGGGCGTGG
AGGCTTTGGATCTCAGCGTGGACGTGGTGGTCACATCTAAATACGGTAGGAAGGGGTCATGAATCTTTTGGTTCTATGGGATCTACAATCCCTATTTTGCATGTTCCTAT
ACAACCTAGTGAAAATCAAGAAGATAATTCGAACAAAGTTCACTGTCAGATCTGCAAGTATTTTTGGCATAATGCTCCAGATTGTTACAATCGTATGGATTTTGCATATC
AGGGTCGTCATCCTCCTTCTCAGCTTGCAACAATGGTTGCAGTGGTAACATCTACATCATCCCGAGATGCGTCTTCGTTTGACACTACTACTGATCCAAATATCTGGTTA
TCAGACACAGGCTGCAACGCTCATCTCACTAGTGATGTTGCCAATCTCAGTCATTCGACAACATATCCGGGCAATGAACGTGTAACAGTTAGCGACAGACAGGCTCTTTC
CATAGCTCATCAAGGATAAGTCATCCAATGTTGTGTTGTTTCATGATCCTTGCGTCAATGGCCTCTATCCGATACGATCCATCTTTTTTGCACCTGTTTCTCTTTAAGCA
TATGTAAGAACCACGGTCTCTGCTTCTATCTGGCATGATCGGTTAGACACCCTTGCTCTGCAATTTTTAATACTACTGTTCATAGCTTTCTCTTTCATGTGAAAAAACGA
TCTATATTTGATATATGTACTCACTGTCTCGCTAGAACTATGTCCAAAAAGTCATTTAGTTTGTCAAATTCATGTTCTACTAGTTCTTTGACTATTGTAGGACTATTGTT
CATTCTGATGTATGGGGTCTTACCTTTATTAAATCAATAAATGGCTTTCATTTCTATGTTTCTTTTATTGATGATTTCTCAAAGTTTACTTGGCTCTATTCAATTGAATA
TAAGTCTGATGTTTACAATGTTATCACTACTTTTATACCCTTAGTTTAAAATCTACTATCTGCTACATTACAACACTTTCGAAGCGATGGGGGAGAGGAATTACAAGTCA
TCGTCTAGCC
Protein sequenceShow/hide protein sequence
MGSTIPILHVPIQPSENQEDNSNKVHCQICKYFWHNAPDCYNRMDFAYQGRHPPSQLATMVAVVTSTSSRDASSFDTTTDPNIWLSDTGCNAHLTSDVANLSHSTTYPGN
ERVTVSDRQALSIAHQG