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Sed0023527 (gene) of Chayote v1 genome

Gene IDSed0023527
OrganismSechium edule (Chayote v1)
DescriptionSplicing factor subunit
Genome locationLG12:6825397..6829085
RNA-Seq ExpressionSed0023527
SyntenySed0023527
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015887858.1 uncharacterized protein At4g14342 [Ziziphus jujuba]1.1e-4297.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

XP_016572387.1 PREDICTED: uncharacterized protein At4g14342 [Capsicum annuum]1.1e-4297.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

XP_022029971.1 uncharacterized protein At4g14342 [Helianthus annuus]8.7e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHAD+SRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

XP_022144699.1 uncharacterized protein At4g14342 isoform X1 [Momordica charantia]5.1e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

XP_031271203.1 uncharacterized protein At4g14342 isoform X1 [Pistacia vera]1.1e-4297.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

TrEMBL top hitse value%identityAlignment
A0A218VSR0 Splicing factor subunit5.5e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

A0A251VBB4 Splicing factor subunit4.2e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHAD+SRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

A0A6J1CT26 Splicing factor subunit2.5e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

A0A6J1EJ56 Splicing factor subunit5.5e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

A0A6J1IBJ4 Splicing factor subunit5.5e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143425.7e-4595.4Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPERE+E
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

Q56K13 Splicing factor 3B subunit 54.1e-2761.9Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        +DR+ I+SQLEHLQ+KY+GTGHAD +++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+KML PCG P ++ +E
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

Q9BWJ5 Splicing factor 3B subunit 54.1e-2761.9Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        +DR+ I+SQLEHLQ+KY+GTGHAD +++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+KML PCG P ++ +E
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

Q9LW64 Uncharacterized protein At3g233255.7e-4595.4Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

Q9VHI4 Splicing factor 3B subunit 56.3e-2865.06Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        +R+NI+SQLEHLQ+KY+GTGHAD ++FEW  N  RDS ASY+GHY IL YFAIAENES  R R+N M++ML PCG PPE+ ++
Subjt:  DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 104.0e-4695.4Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 104.0e-4695.4Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPERE+E
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGATTTAAGTAGATTTGAATGGGCTGTGAACAT
TCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCGATTCTAGCTTACTTTGCTATAGCAGAAAATGAATCTATTGGAAGGGAACGCTACAATTTTATGCAGAAAA
TGCTATTACCTTGCGGCCTTCCACCAGAAAGGGAAGACGAATGA
mRNA sequenceShow/hide mRNA sequence
GTGAATTTGCTGGTAAATTGAATATTTGGAACGCAAGATATATACATACGCGCTTTTGCTGTGGTTGGTCTCTTCTGTGGAATCCGCCCCCAATCGAAGATGCAGGCCAG
TGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGATTTAAGTAGATTTGAATGGGCTGTGAACATTCAGCGTGATA
GCTATGCATCATATGTTGGACATTACCCGATTCTAGCTTACTTTGCTATAGCAGAAAATGAATCTATTGGAAGGGAACGCTACAATTTTATGCAGAAAATGCTATTACCT
TGCGGCCTTCCACCAGAAAGGGAAGACGAATGAGATCTTATTTGGTTGTAACAAGAAATAGTAGTACTCTGGATCTTTGTGGGGTTAACAATTTTTGGGCTTTTGAGCAA
AATCTGTGTTTTGCTAAGAAGCAAAGAATACGAAATGCGAATTATTATTTTCTCTTGTAATGCTCCTGTCTGTTATAAGAAACAGTTTCCAACTAATCTACAATTCTCTG
TACTTTTACCCTATCGTTTTCAGTTTATTTCAAGAAAAAGTATTCTCTCAGTCGTAGATTGAAGAACAGTTGCATCTTTAGATGTATAATTTGGCTTCACCATGAATTGA
TTTGTTTTCTTGACA
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE