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Sed0023553 (gene) of Chayote v1 genome

Gene IDSed0023553
OrganismSechium edule (Chayote v1)
DescriptionMYB-like transcription factor ETC3
Genome locationLG01:67389166..67389576
RNA-Seq ExpressionSed0023553
SyntenySed0023553
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010026 - trichome differentiation (biological process)
GO:0010228 - vegetative to reproductive phase transition of meristem (biological process)
GO:0010597 - green leaf volatile biosynthetic process (biological process)
GO:0048765 - root hair cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8528251.1 hypothetical protein F0562_035498 [Nyssa sinensis]2.0e-1765.22Show/hide
Query:  KQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        K+ WKQ++++ +N+ EV+S+EWK I ++EQEEDLI+RM+R VGDRWDLIAGRIP R A EIERFWI++H
Subjt:  KQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

XP_021284678.1 transcription factor TRY-like isoform X4 [Herrania umbratica]1.5e-1761.76Show/hide
Query:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        ++P KQ++   S +EV+S+EW+ I+++EQEEDL++R++R VGDRWDLIAGRIP+RTA EIERFWI++H
Subjt:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

XP_022146038.1 transcription factor CPC-like isoform X2 [Momordica charantia]1.6e-2783.75Show/hide
Query:  METEAKKIGKQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHAS
        ME EAKK+ KQP KQS+SRNS++ EVTSLEWK+IQISEQEEDLI RMH+ VGDRWDLIAGRIP RTAVEIERFWILKHAS
Subjt:  METEAKKIGKQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHAS

XP_038680402.1 transcription factor CPC-like [Tripterygium wilfordii]2.6e-1763.77Show/hide
Query:  KQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        K+P KQ+++R++ + EV+S+EW+ I+++EQEEDLI+RMHR VGD+WDLIAGRIP R A EIERFWI++H
Subjt:  KQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

XP_038874276.1 transcription factor CPC-like [Benincasa hispida]1.6e-2782.5Show/hide
Query:  METEAKKIGKQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHAS
        ME EAKK  KQP KQS+ R SN+ EVTSLEW+VIQIS+QEEDLIHRMHR VGDRWDLIAGRIP RTAVEIERFWILKH S
Subjt:  METEAKKIGKQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHAS

TrEMBL top hitse value%identityAlignment
A0A4V6A0D9 Transcription factor TRY-like4.7e-1769.23Show/hide
Query:  KQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        KQ++  NS + EV+S+EW+ I +SEQEEDLIHRM+R VG+RWDLIAGRIP R A EIERFWI+KH
Subjt:  KQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

A0A5J5AGH9 SANT domain-containing protein9.5e-1865.22Show/hide
Query:  KQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        K+ WKQ++++ +N+ EV+S+EWK I ++EQEEDLI+RM+R VGDRWDLIAGRIP R A EIERFWI++H
Subjt:  KQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

A0A6J1ACJ0 transcription factor TRY-like isoform X47.3e-1861.76Show/hide
Query:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        ++P KQ++   S +EV+S+EW+ I+++EQEEDL++R++R VGDRWDLIAGRIP+RTA EIERFWI++H
Subjt:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

A0A6J1ACY4 transcription factor CPC-like isoform X13.6e-1757.53Show/hide
Query:  KKIGKQPWKQSR-SRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        +K+ ++P KQ++  ++++ EV+S+EW+ I+++EQEEDL++R++R VGDRWDLIAGRIP+RTA EIERFWI++H
Subjt:  KKIGKQPWKQSR-SRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

A0A6J1CXI2 transcription factor CPC-like isoform X27.8e-2883.75Show/hide
Query:  METEAKKIGKQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHAS
        ME EAKK+ KQP KQS+SRNS++ EVTSLEWK+IQISEQEEDLI RMH+ VGDRWDLIAGRIP RTAVEIERFWILKHAS
Subjt:  METEAKKIGKQPWKQSRSRNSNA-EVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHAS

SwissProt top hitse value%identityAlignment
O22059 Transcription factor CPC3.1e-1854.67Show/hide
Query:  EAKKIGKQPWKQSRSRNS-NAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        +A+K+ K+  +QS+++ S + EV+S+EW+ +++SE+EEDLI RM++ VGDRW+LIAGRIP RT  EIER+W++KH
Subjt:  EAKKIGKQPWKQSRSRNS-NAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

Q84RD1 MYB-like transcription factor ETC25.0e-1658.46Show/hide
Query:  KQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHA
        K +RSR  + EV+S+EW+ I ++EQEEDLI RM+R VG+RWDLIAGR+  R A EIER+WI++++
Subjt:  KQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHA

Q8GV05 Transcription factor TRY8.6e-1659.32Show/hide
Query:  NSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHA
        + + EV+S+EW+ I ++EQEEDLI RM+R VGDRWDLIAGR+P R   EIER+WI++++
Subjt:  NSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHA

Q9LNI5 MYB-like transcription factor ETC12.3e-1663.79Show/hide
Query:  NSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        +S+ EV+SLEW+ I ++++EEDLI RM++ VG+RWDLIAGRIP RTA EIERFW++K+
Subjt:  NSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

Q9M157 MYB-like transcription factor ETC34.9e-1961.76Show/hide
Query:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        KQP   S   +S+ EV+SLEW+V+ +S++EEDL+ RMH+ VGDRW+LIAGRIP RTA EIERFW++K+
Subjt:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

Arabidopsis top hitse value%identityAlignment
AT1G01380.1 Homeodomain-like superfamily protein1.6e-1763.79Show/hide
Query:  NSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        +S+ EV+SLEW+ I ++++EEDLI RM++ VG+RWDLIAGRIP RTA EIERFW++K+
Subjt:  NSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

AT2G46410.1 Homeodomain-like superfamily protein2.2e-1954.67Show/hide
Query:  EAKKIGKQPWKQSRSRNS-NAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        +A+K+ K+  +QS+++ S + EV+S+EW+ +++SE+EEDLI RM++ VGDRW+LIAGRIP RT  EIER+W++KH
Subjt:  EAKKIGKQPWKQSRSRNS-NAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

AT4G01060.1 CAPRICE-like MYB33.8e-1960Show/hide
Query:  KQPWKQS--RSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        KQP   S   S +   EV+SLEW+V+ +S++EEDL+ RMH+ VGDRW+LIAGRIP RTA EIERFW++K+
Subjt:  KQPWKQS--RSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

AT4G01060.2 CAPRICE-like MYB31.7e-1961.76Show/hide
Query:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        KQP K +    S++EV+SLEW+V+ +S++EEDL+ RMH+ VGDRW+LIAGRIP RTA EIERFW++K+
Subjt:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH

AT4G01060.3 CAPRICE-like MYB33.4e-2061.76Show/hide
Query:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH
        KQP   S   +S+ EV+SLEW+V+ +S++EEDL+ RMH+ VGDRW+LIAGRIP RTA EIERFW++K+
Subjt:  KQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACCGAAGCTAAGAAGATCGGGAAACAGCCATGGAAACAGTCCAGGAGCAGGAATTCGAACGCGGAAGTTACCAGTTTGGAATGGAAGGTCATTCAAATCAGTGA
GCAGGAGGAGGATCTCATACATAGAATGCATAGGTTTGTTGGAGACAGGTGGGATTTGATTGCTGGGCGAATTCCAGATCGAACTGCAGTGGAAATAGAGAGGTTTTGGA
TATTGAAACATGCTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACCGAAGCTAAGAAGATCGGGAAACAGCCATGGAAACAGTCCAGGAGCAGGAATTCGAACGCGGAAGTTACCAGTTTGGAATGGAAGGTCATTCAAATCAGTGA
GCAGGAGGAGGATCTCATACATAGAATGCATAGGTTTGTTGGAGACAGGTGGGATTTGATTGCTGGGCGAATTCCAGATCGAACTGCAGTGGAAATAGAGAGGTTTTGGA
TATTGAAACATGCTTCCTGA
Protein sequenceShow/hide protein sequence
METEAKKIGKQPWKQSRSRNSNAEVTSLEWKVIQISEQEEDLIHRMHRFVGDRWDLIAGRIPDRTAVEIERFWILKHAS