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Sed0023561 (gene) of Chayote v1 genome

Gene IDSed0023561
OrganismSechium edule (Chayote v1)
DescriptiontRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6, putative
Genome locationLG13:8621527..8621943
RNA-Seq ExpressionSed0023561
SyntenySed0023561
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577225.1 hypothetical protein SDJN03_24799, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2143.88Show/hide
Query:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE
        K FRFIE CFL++ +S   SRL I         GKL+GF+A+PLF FLLCNAIIVA+VAKP QFS  S+E +RIYE+LI KS             S ++E
Subjt:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE

Query:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI
        EVEIVYQDK  I                               +++ ++ E    L+H         +LS++ FQ+KIE FIAKEKKFRR+ES AI
Subjt:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI

XP_022985131.1 uncharacterized protein LOC111483214 [Cucurbita maxima]2.3e-2143.37Show/hide
Query:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE
        K FRF+E CFL++ LS   SRL I         GKL+GF+A+PLF FLLCNAIIVA+VAKP QFS  S+E +RIYE+LI KS             S ++E
Subjt:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE

Query:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI
        +VEIVYQDK  I                               +++ ++ E    L+H         +LS++ FQ+KIE FIAKEKKFRR+ES AI
Subjt:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI

XP_022989466.1 uncharacterized protein LOC111486513 [Cucurbita maxima]9.3e-2345.89Show/hide
Query:  KLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSS-------EADRIYEDLILKS---SWMSEEVE
        K FRF+ELCFL+L LS   SRL I          KL GFLA+PLF FLLCNAII A++AKP +FS RS+       E DRIY DLI KS        EVE
Subjt:  KLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSS-------EADRIYEDLILKS---SWMSEEVE

Query:  IVYQDKL-----------DIEVKSADVESECGLDHL------------------------------------------ELSSDAFQRKIEEFIAKEKKFR
        IVYQDK             IE ++AD ESE GLDH                                           +LSS+ FQRKIE FIAKEKKFR
Subjt:  IVYQDKL-----------DIEVKSADVESECGLDHL------------------------------------------ELSSDAFQRKIEEFIAKEKKFR

Query:  RQESSAI
        R+ESSAI
Subjt:  RQESSAI

XP_023552883.1 uncharacterized protein LOC111810408 [Cucurbita pepo subsp. pepo]1.8e-2144.39Show/hide
Query:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE
        K FRFIE CFL++ LS   SRL I         GKL+GF+A+PLF FLLCNAIIVA+VAKP QFS  S+E +RIYE+LI KS             S ++E
Subjt:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE

Query:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI
        EVEIVYQDK  I                               +++ ++ E    L+H         +LS++ FQ+KIE FIAKEKKFRR+ES AI
Subjt:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI

XP_038888396.1 uncharacterized protein LOC120078241 [Benincasa hispida]6.4e-2445.79Show/hide
Query:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQF--------SHRSSEADRIYEDLILK------SSWMS
        K FRF+EL FL+L LS   SRL I         GKL  F+ATPLF FLLCNAIIVA+VAKP QF        S  S+EADRIYEDLI K      +  +S
Subjt:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQF--------SHRSSEADRIYEDLILK------SSWMS

Query:  EEVEIVYQDK-----------LDIEVKSADVESECGLDHL---------------------------------------------ELSSDAFQRKIEEFI
        EEVEIVYQDK            +IEVK+ D+E+E GL H                                              +LSS+ FQRKIE FI
Subjt:  EEVEIVYQDK-----------LDIEVKSADVESECGLDHL---------------------------------------------ELSSDAFQRKIEEFI

Query:  AKEKKFRRQESSAI
        AKEKKFRR+ESSAI
Subjt:  AKEKKFRRQESSAI

TrEMBL top hitse value%identityAlignment
A0A0A0KY10 Uncharacterized protein3.2e-2144.86Show/hide
Query:  TKLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHR-SSEADRIYEDLILKSSW-------MSEEV-E
        +K FRF+EL FL+L LS   SRL I          KL  F+ATPLF FLLCNAIIVA+VAKP QFS R +SE  RIYEDLI K+          SEEV E
Subjt:  TKLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHR-SSEADRIYEDLILKSSW-------MSEEV-E

Query:  IVYQDK---------------LDIEVKSADVESECGLDHL---------------------------------------------ELSSDAFQRKIEEFI
        IVYQDK                +IEVK+ D+ESE GL                                                +LSS+ FQRKIE FI
Subjt:  IVYQDK---------------LDIEVKSADVESECGLDHL---------------------------------------------ELSSDAFQRKIEEFI

Query:  AKEKKFRRQESSAI
        AKEKKFRR+ESSAI
Subjt:  AKEKKFRRQESSAI

A0A5D3CYU3 Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm64.2e-2143.72Show/hide
Query:  TKLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSH--RSSEADRIYEDLILKSSW-------MSEEV-
        +K FRF+EL FL+L LS   SRL I          KL  F+ATPLF FLLCNAIIVA+VAKP QFS    S + DRIYEDLI K+          SEEV 
Subjt:  TKLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSH--RSSEADRIYEDLILKSSW-------MSEEV-

Query:  EIVYQDK---------------LDIEVKSADVESECGLDHL---------------------------------------------ELSSDAFQRKIEEF
        EIVYQDK                +IE+K+ D+ES+ GL H                                              +LSS+ FQRKIE F
Subjt:  EIVYQDK---------------LDIEVKSADVESECGLDHL---------------------------------------------ELSSDAFQRKIEEF

Query:  IAKEKKFRRQESSAI
        IAKEKKFRR+ESSAI
Subjt:  IAKEKKFRRQESSAI

A0A6J1ERL9 uncharacterized protein LOC1114359101.9e-2143.88Show/hide
Query:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE
        K FR IE CFL++ LS   SRL I         GKL+GF+A+PLF FLLCNAIIVA+VAKP QFS  S+E +RIYE+LI KS             S ++E
Subjt:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE

Query:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI
        EVEIVYQDK  I                               +++ ++ E    L+H         +LS++ FQ+KIE FIAKEKKFRR+ES AI
Subjt:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI

A0A6J1J794 uncharacterized protein LOC1114832141.1e-2143.37Show/hide
Query:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE
        K FRF+E CFL++ LS   SRL I         GKL+GF+A+PLF FLLCNAIIVA+VAKP QFS  S+E +RIYE+LI KS             S ++E
Subjt:  KLFRFIELCFLILLLS---SRLSI---------GKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKS-------------SWMSE

Query:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI
        +VEIVYQDK  I                               +++ ++ E    L+H         +LS++ FQ+KIE FIAKEKKFRR+ES AI
Subjt:  EVEIVYQDKLDI-------------------------------EVKSADVESECGLDHL--------ELSSDAFQRKIEEFIAKEKKFRRQESSAI

A0A6J1JK52 uncharacterized protein LOC1114865134.5e-2345.89Show/hide
Query:  KLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSS-------EADRIYEDLILKS---SWMSEEVE
        K FRF+ELCFL+L LS   SRL I          KL GFLA+PLF FLLCNAII A++AKP +FS RS+       E DRIY DLI KS        EVE
Subjt:  KLFRFIELCFLILLLS---SRLSIG---------KLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSS-------EADRIYEDLILKS---SWMSEEVE

Query:  IVYQDKL-----------DIEVKSADVESECGLDHL------------------------------------------ELSSDAFQRKIEEFIAKEKKFR
        IVYQDK             IE ++AD ESE GLDH                                           +LSS+ FQRKIE FIAKEKKFR
Subjt:  IVYQDKL-----------DIEVKSADVESECGLDHL------------------------------------------ELSSDAFQRKIEEFIAKEKKFR

Query:  RQESSAI
        R+ESSAI
Subjt:  RQESSAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAAATTGTTCCGATTCATAGAGCTCTGCTTTCTAATCCTCTTGCTCTCCTCTCGCCTCTCGATCGGAAAACTCGTCGGCTTCCTCGCCACTCCGCTCTTTAGCTT
CCTCCTTTGTAATGCCATCATTGTCGCAGTTGTTGCAAAACCCATCCAATTCTCACACCGCAGCAGCGAAGCCGATCGCATTTACGAAGACCTAATTCTTAAATCCTCTT
GGATGTCGGAAGAGGTGGAGATTGTGTACCAGGACAAACTCGATATCGAAGTGAAGAGCGCGGATGTAGAGTCGGAATGTGGATTAGATCATTTGGAATTGAGCAGCGAC
GCATTTCAGAGGAAGATTGAGGAGTTCATAGCGAAAGAGAAGAAGTTTCGACGGCAAGAATCTTCCGCCATTGAAACTCCACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCAAATTGTTCCGATTCATAGAGCTCTGCTTTCTAATCCTCTTGCTCTCCTCTCGCCTCTCGATCGGAAAACTCGTCGGCTTCCTCGCCACTCCGCTCTTTAGCTT
CCTCCTTTGTAATGCCATCATTGTCGCAGTTGTTGCAAAACCCATCCAATTCTCACACCGCAGCAGCGAAGCCGATCGCATTTACGAAGACCTAATTCTTAAATCCTCTT
GGATGTCGGAAGAGGTGGAGATTGTGTACCAGGACAAACTCGATATCGAAGTGAAGAGCGCGGATGTAGAGTCGGAATGTGGATTAGATCATTTGGAATTGAGCAGCGAC
GCATTTCAGAGGAAGATTGAGGAGTTCATAGCGAAAGAGAAGAAGTTTCGACGGCAAGAATCTTCCGCCATTGAAACTCCACTGTGA
Protein sequenceShow/hide protein sequence
MTKLFRFIELCFLILLLSSRLSIGKLVGFLATPLFSFLLCNAIIVAVVAKPIQFSHRSSEADRIYEDLILKSSWMSEEVEIVYQDKLDIEVKSADVESECGLDHLELSSD
AFQRKIEEFIAKEKKFRRQESSAIETPL