; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0023585 (gene) of Chayote v1 genome

Gene IDSed0023585
OrganismSechium edule (Chayote v1)
DescriptionrRNA-processing protein FCF1-like protein
Genome locationLG06:36705150..36707823
RNA-Seq ExpressionSed0023585
SyntenySed0023585
Gene Ontology termsGO:0032040 - small-subunit processome (cellular component)
InterPro domainsIPR006984 - rRNA-processing protein Fcf1/Utp23
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053874.1 rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa]1.4e-4657.58Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKK+ TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+NT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY-----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG
        CITDCV AELE+L  KY     +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYITRHQYSIERLPEATIGGG
Subjt:  CITDCVRAELEKLQLKY-----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG

PWA78492.1 PIN domain-like family protein [Artemisia annua]1.3e-4761.27Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS-------------TICITDCVRAELE
        MKK+ + KA+K +KEEVLNP +KD TK+NL               R  PYV S LFF YNT LGPPYRVLVDT+             T CITDCV AELE
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS-------------TICITDCVRAELE

Query:  KLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIY
        KL  KY    +I+K+PRFERLPCTHKGTY DDC VERV QIPGVPIMYIT+H+YSIERLPEAT+GGG +  IY
Subjt:  KLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIY

TYK25530.1 rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa]4.8e-4758.38Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKKM TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+NT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG
        CITDCV AELE+L  KY    +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYITRHQYSIERLPEATIGGG
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG

XP_004136642.1 rRNA-processing protein FCF1 homolog [Cucumis sativus]3.6e-4758.67Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKKM TSKAIKNYKEEVLNPKRKD TKENL               R  P VPSALFFKYNT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG
        CITDCV AELE+L  KY    +I+K+PRFERLPCTHKGTY DDC VERV Q                   +PGVPIMYITRHQYSIERLPEATIGG
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG

XP_038903189.1 rRNA-processing protein FCF1 homolog [Benincasa hispida]6.2e-4758.67Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKKM TSKAIKNYKE+VLNPKRKD TKENL               R  P VPSALFFKYNT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG
        CITDCV AELE+L  KY    +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYITRHQYSIERLPEATIGG
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG

TrEMBL top hitse value%identityAlignment
A0A0A0LEW8 PINc domain-containing protein1.8e-4758.67Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKKM TSKAIKNYKEEVLNPKRKD TKENL               R  P VPSALFFKYNT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG
        CITDCV AELE+L  KY    +I+K+PRFERLPCTHKGTY DDC VERV Q                   +PGVPIMYITRHQYSIERLPEATIGG
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG

A0A2U1NYA1 PIN domain-like family protein6.1e-4861.27Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS-------------TICITDCVRAELE
        MKK+ + KA+K +KEEVLNP +KD TK+NL               R  PYV S LFF YNT LGPPYRVLVDT+             T CITDCV AELE
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS-------------TICITDCVRAELE

Query:  KLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIY
        KL  KY    +I+K+PRFERLPCTHKGTY DDC VERV QIPGVPIMYIT+H+YSIERLPEAT+GGG +  IY
Subjt:  KLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIY

A0A5A7UFA7 rRNA-processing protein FCF1-like protein6.7e-4757.58Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKK+ TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+NT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY-----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG
        CITDCV AELE+L  KY     +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYITRHQYSIERLPEATIGGG
Subjt:  CITDCVRAELEKLQLKY-----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG

A0A5D3DQI4 rRNA-processing protein FCF1-like protein2.3e-4758.38Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKKM TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+NT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG
        CITDCV AELE+L  KY    +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYITRHQYSIERLPEATIGGG
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGGG

A0A6J1DX25 rRNA-processing protein FCF1 homolog8.7e-4757.65Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        MKKM TSKAIKNYK+EVLNPK+KD TKENL               R  P VPSALFFKYNT LGPPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG
        CITDCV AELE+L  KY    +I+K+PRFERLPCTHKGTY DDC VERV Q                   +PGVPIMYITRHQYSIERLPEATIGG
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG

SwissProt top hitse value%identityAlignment
O13610 rRNA-processing protein fcf11.3e-2337.77Show/hide
Query:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C
        +K A  K + N K++ L  ++KD  KE  E+  K+         R  P + S LFF++N  LGPPY V++DT+ I                        C
Subjt:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C

Query:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERL
        I+DCV AELEKL ++Y    +I+K+ RFERLPCTHKGTY DDC V+RV Q                   IPG+PI+ +  H+  +ERL
Subjt:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERL

Q32PD0 rRNA-processing protein FCF1 homolog7.2e-3043.68Show/hide
Query:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C
        +K AT K + + +++ L  K KD  K   +E  KD        +R  P  PS LFF+YNT LGPPY +LVDT+ I                        C
Subjt:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C

Query:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE
        ITDCV AE+EKL  KY    +I+K+PRFERLPCTHKGTY DDC V+RV Q                   IPGVPIMYI+ H+Y+IER+P+
Subjt:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE

Q5RFQ0 rRNA-processing protein FCF1 homolog7.2e-3043.68Show/hide
Query:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C
        +K AT K + + +++ L  K KD  K   +E  KD        +R  P  PS LFF+YNT LGPPY +LVDT+ I                        C
Subjt:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C

Query:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE
        ITDCV AE+EKL  KY    +I+K+PRFERLPCTHKGTY DDC V+RV Q                   IPGVPIMYI+ H+Y+IER+P+
Subjt:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE

Q9CTH6 rRNA-processing protein FCF1 homolog3.6e-2942.63Show/hide
Query:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C
        +K AT K + + ++E L  K KD  K   +E  KD        +R  P  PS LFF+YNT LGPPY +LVDT+ I                        C
Subjt:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C

Query:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE
        ITDCV AE+EKL  K+    +I+K+PRF+RLPCTHKGTY DDC V+RV Q                   IPGVPIMY++ H+Y+IER+P+
Subjt:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE

Q9Y324 rRNA-processing protein FCF1 homolog7.2e-3043.68Show/hide
Query:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C
        +K AT K + + +++ L  K KD  K   +E  KD        +R  P  PS LFF+YNT LGPPY +LVDT+ I                        C
Subjt:  KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTI------------------------C

Query:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE
        ITDCV AE+EKL  KY    +I+K+PRFERLPCTHKGTY DDC V+RV Q                   IPGVPIMYI+ H+Y+IER+P+
Subjt:  ITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPE

Arabidopsis top hitse value%identityAlignment
AT1G26530.1 PIN domain-like family protein3.2e-3346.07Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTICITDCVRAELEKLQLKY-------
        MK M + KA+K+YKEEVLNP +KD T+                  R  P VPS LFF +N+ L PPYRVLVDT+ I  +   + +LEK  + +       
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTICITDCVRAELEKLQLKY-------

Query:  ---QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG
            I+K+PRFERLPC  KGTY DDC V+RV Q                   IPGVPIMY+T+ +YSIE+LPEATIGG
Subjt:  ---QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG

AT2G46230.1 PIN domain-like family protein2.5e-3846.94Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        +KKM + KA+K+YKEEVLNP +KD T+                  R  P VP+ LFF YN+ L PPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG
        CITDCV AELEKL  KY    +I+K+P FERLPC HKGTY DDC V+RV Q                   IPGVPIMY+T  +YSIE+LPEAT+GG
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG

AT2G46230.2 PIN domain-like family protein4.0e-2847.68Show/hide
Query:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI
        +KKM + KA+K+YKEEVLNP +KD T+                  R  P VP+ LFF YN+ L PPYRVLVDT+                        T 
Subjt:  MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTS------------------------TI

Query:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ
        CITDCV AELEKL  KY    +I+K+P FERLPC HKGTY DDC V+RV Q
Subjt:  CITDCVRAELEKLQLKY----QISKNPRFERLPCTHKGTYVDDCFVERVKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGATGGCAACCTCGAAAGCAATTAAGAACTATAAAGAAGAGGTCTTGAATCCAAAGAGAAAAGATCCTACCAAGGAAAATCTCGAAGAAATATGTAAGGATCT
TTTTGTTTTTGTTTTTAATTTCCAAAGAGTTTTTCCATATGTTCCTTCAGCACTATTCTTCAAGTACAACACTGGCTTGGGGCCTCCTTATCGGGTTTTGGTAGATACAA
GCACTATTTGTATAACAGATTGCGTGCGGGCTGAGCTTGAGAAATTACAGCTGAAGTATCAAATATCTAAGAACCCACGTTTCGAGAGATTACCATGTACTCATAAAGGA
ACATATGTTGATGATTGCTTTGTTGAAAGGGTGAAGCAGATTCCTGGTGTACCAATCATGTACATAACTCGACATCAGTATTCAATTGAACGATTGCCTGAAGCAACAAT
TGGGGGAGGTATATATATATATATATATACTATATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGATGGCAACCTCGAAAGCAATTAAGAACTATAAAGAAGAGGTCTTGAATCCAAAGAGAAAAGATCCTACCAAGGAAAATCTCGAAGAAATATGTAAGGATCT
TTTTGTTTTTGTTTTTAATTTCCAAAGAGTTTTTCCATATGTTCCTTCAGCACTATTCTTCAAGTACAACACTGGCTTGGGGCCTCCTTATCGGGTTTTGGTAGATACAA
GCACTATTTGTATAACAGATTGCGTGCGGGCTGAGCTTGAGAAATTACAGCTGAAGTATCAAATATCTAAGAACCCACGTTTCGAGAGATTACCATGTACTCATAAAGGA
ACATATGTTGATGATTGCTTTGTTGAAAGGGTGAAGCAGATTCCTGGTGTACCAATCATGTACATAACTCGACATCAGTATTCAATTGAACGATTGCCTGAAGCAACAAT
TGGGGGAGGTATATATATATATATATATACTATATAG
Protein sequenceShow/hide protein sequence
MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTICITDCVRAELEKLQLKYQISKNPRFERLPCTHKG
TYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIYTI