; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0023600 (gene) of Chayote v1 genome

Gene IDSed0023600
OrganismSechium edule (Chayote v1)
Descriptioncold shock domain-containing protein 3-like
Genome locationLG13:4888911..4894672
RNA-Seq ExpressionSed0023600
SyntenySed0023600
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR010666 - Zinc finger, GRF-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577083.1 DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. sororia]1.1e-9668.5Show/hide
Query:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF
        AL+  P ++SQ+      SG+KG ISA TT  A+SEG GSCFKCGKLGHWARDC   G G     SGND+S VA+K+CPCG+G C VLTANTERNRGR+F
Subjt:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF

Query:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY
        Y+CPVRQENGGCGFFEWCDNASATN+    SQN A S   SDL+CPCGAG+CI  TAKT EN GQQFY CPSYQA+CGFFQWCKE S   KNQVS S+VY
Subjt:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY

Query:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        GNT D SK +P  AR G SC+KCGGEGHWARDCSQS APSN SSS           G+CFKCG+PGHWARDCS
Subjt:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

XP_022931285.1 cold shock domain-containing protein 3-like [Cucurbita moschata]2.3e-9768.86Show/hide
Query:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF
        AL+  P ++SQ+      SG+KG ISA TT  A+SEG GSCFKCGKLGHWARDC   G G     SGND+S VA+K+CPCG+G C VLTANTERNRGR+F
Subjt:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF

Query:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY
        Y+CPVRQENGGCGFFEWCDNASATN+    SQN A S   SDL+CPCGAG+CI  TAKT EN GQQFY CPSYQA+CGFFQWCKE S   KNQVS S+VY
Subjt:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY

Query:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        GNT DTSK +P  AR G SC+KCGGEGHWARDCSQS APSN SSS           G+CFKCG+PGHWARDCS
Subjt:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

XP_022984959.1 cold shock domain-containing protein 3-like [Cucurbita maxima]3.2e-9969.96Show/hide
Query:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF
        AL+  P ++SQ+      SG+KG ISA TT  A+S+G GSCFKCGKLGHWARDC   G G     S ND+S VA+K+CPCG G C VLTANTERNRGR+F
Subjt:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF

Query:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY
        Y+CPVRQENGGCGFFEWCDNASATN+    SQN A S   SDL+CPCGAG+CI  TAKT EN GQQFY CPSYQA+CGFFQWCKEPS   KNQVSAS+VY
Subjt:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY

Query:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        GNT DTSK +P  AR G SC+KCGGEGHWARDCSQS APSN   +EFG + SSS  G+CFKCG+PGHWARDCS
Subjt:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

XP_023552737.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]2.1e-9868.86Show/hide
Query:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF
        AL+  P ++SQ+      SG+KG ISA TT  A+SEG GSCFKCGKLGHWARDC   G G     SGND+S VA+K+CPCG+G C VLTANTERNRGR+F
Subjt:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF

Query:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY
        Y+C VRQENGGCGFFEWCDNAS+TN+    SQN A S   SDL+CPCGAG+CI  TAKT +N GQQFY CPSYQA+CGFFQWCKEPS   KNQ S S+VY
Subjt:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY

Query:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        GNT DTSK +P  AR G SC+KCGGEGHWARDCSQS APSN   +EFG + SSS  G+CFKCG+PGHWARDCS
Subjt:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

XP_038903890.1 cold shock domain-containing protein 3-like [Benincasa hispida]5.1e-9769.74Show/hide
Query:  ALQESPNLISQI------SGHKGLISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYR
        AL+ +P L+SQI      SG+KG ISA TTA+SEG GSCFKCGKLGHWARDC   G G     SGND+S VA+KACPCGLG CS+LTANTERNRGR+FY+
Subjt:  ALQESPNLISQI------SGHKGLISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYR

Query:  CPVRQENGGCGFFEWCDNASA--TNVSQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVYGNTN
        CPVRQENGGCGFFEWCD+        SQN A S   SD+QCPCGAG+CII TAKT EN GQQFY CPSYQA+CGFFQWCKEPS   KNQVSAS+VY NT+
Subjt:  CPVRQENGGCGFFEWCDNASA--TNVSQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVYGNTN

Query:  DTSKSIPVIARTG---SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        D SKS+ V  RTG   SC+KCGGEGHWARDCSQS A  N    EFG S SSS+ G CFKCG+PGHWARDC+
Subjt:  DTSKSIPVIARTG---SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

TrEMBL top hitse value%identityAlignment
A0A0A0KVB6 Uncharacterized protein8.2e-8564.1Show/hide
Query:  LALQESPNLISQISGHKG------LISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRFY
        +A  +    +SQISG +        I   TTA+SEGDGSCFKCGKLGHWARDC   G G     SGND S V DKACPCG G CSVLTANTERNRGR+FY
Subjt:  LALQESPNLISQISGHKG------LISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRFY

Query:  RCPVRQENGGCGFFEWCDNASATNV----SQNHAPS--SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVYGN
        +CPVRQENGGCGFFEWCD+AS  NV    SQN   S  SDLQCPCGAG+C I TAKT  N G+QFYCCPS QASC FF+WC+EPS   KNQ S  +VYGN
Subjt:  RCPVRQENGGCGFFEWCDNASATNV----SQNHAPS--SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVYGN

Query:  TNDTSKSIPVIART---GSCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        TNDTSKS  +  +T    S +K G EGHWARD SQS   S+ S +E+G S SSS  G+CFKCG PGHWARDCS
Subjt:  TNDTSKSIPVIART---GSCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

A0A1S4DYV0 DNA-binding protein HEXBP-like7.4e-7863.16Show/hide
Query:  KGLISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASA
        +G   A    K +  G+CFKCGKLGHWARDC   G G     SGND S VA+KA PCG G C VLTANTERNRGR+FYRC VRQENGGCGFFEWCD+A  
Subjt:  KGLISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASA

Query:  TNVSQNHAPSSDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVYGNTNDTSKSIPVIART---GSCFKCGGEGH
         N   +  P  DLQCPCGAG+C I TAK+  N G+QFYCCPS Q SC FFQWC+EPS   KNQVSA +VY   ND SKS+    +T    SC+KCGGEGH
Subjt:  TNVSQNHAPSSDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVYGNTNDTSKSIPVIART---GSCFKCGGEGH

Query:  WARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCSGS
        WARDCSQS +PSN  ++ +G S SSS+ G+CFKCG+PGHWA+DCS S
Subjt:  WARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCSGS

A0A6J1C4N6 DNA-binding protein HEXBP-like1.2e-9162.2Show/hide
Query:  ALQESPNLISQISG-------------HKGLISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERN
        AL+  PNL SQISG             ++G +SA  TA+SEG GSCFKCGKLGHWARDC   G G     +G D+S VA+KACPCGLG C VLTANTERN
Subjt:  ALQESPNLISQISG-------------HKGLISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERN

Query:  RGRRFYRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEP---SKNQVS
        RGR+FY+CPVRQENGGCGFFEWCD+AS TNV    SQN A S   SDL CPCGAG+CII TAKT EN GQQFY CPSYQ SCGFFQWCKEP   +KNQV+
Subjt:  RGRRFYRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEP---SKNQVS

Query:  ASEVYGNTNDTSKSIPVIART---------------GSCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDC
          ++YGN NDTSKS     RT                SC+KCGGEGHWARDCSQS+  SN   +E G + S+S  G CFKC +PGHWARDC
Subjt:  ASEVYGNTNDTSKSIPVIART---------------GSCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDC

A0A6J1EZ11 cold shock domain-containing protein 3-like1.1e-9768.86Show/hide
Query:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF
        AL+  P ++SQ+      SG+KG ISA TT  A+SEG GSCFKCGKLGHWARDC   G G     SGND+S VA+K+CPCG+G C VLTANTERNRGR+F
Subjt:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF

Query:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY
        Y+CPVRQENGGCGFFEWCDNASATN+    SQN A S   SDL+CPCGAG+CI  TAKT EN GQQFY CPSYQA+CGFFQWCKE S   KNQVS S+VY
Subjt:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY

Query:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        GNT DTSK +P  AR G SC+KCGGEGHWARDCSQS APSN SSS           G+CFKCG+PGHWARDCS
Subjt:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

A0A6J1JBZ0 cold shock domain-containing protein 3-like1.5e-9969.96Show/hide
Query:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF
        AL+  P ++SQ+      SG+KG ISA TT  A+S+G GSCFKCGKLGHWARDC   G G     S ND+S VA+K+CPCG G C VLTANTERNRGR+F
Subjt:  ALQESPNLISQI------SGHKGLISATTT--AKSEGDGSCFKCGKLGHWARDCSTTGVG-----SGNDSSAVADKACPCGLGACSVLTANTERNRGRRF

Query:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY
        Y+CPVRQENGGCGFFEWCDNASATN+    SQN A S   SDL+CPCGAG+CI  TAKT EN GQQFY CPSYQA+CGFFQWCKEPS   KNQVSAS+VY
Subjt:  YRCPVRQENGGCGFFEWCDNASATNV----SQNHAPS---SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPS---KNQVSASEVY

Query:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        GNT DTSK +P  AR G SC+KCGGEGHWARDCSQS APSN   +EFG + SSS  G+CFKCG+PGHWARDCS
Subjt:  GNTNDTSKSIPVIARTG-SCFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 15.4e-0928.81Show/hide
Query:  AKSEGDGS-CFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAP--SS
        A+  G GS C+ CG+LGH ++DC   G G G +  +   + C                      Y C      G  G F   D  SA N  Q  A    +
Subjt:  AKSEGDGS-CFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAP--SS

Query:  DLQCPCGAGTCIIR--TAKTVENAGQQFYCCPSYQA--SCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSN
        D    CG    + R  T K+V N  Q+           +CG           +V+A  V                +G+C+ CGG GH ARDC+    PS 
Subjt:  DLQCPCGAGTCIIR--TAKTVENAGQQFYCCPSYQA--SCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSN

Query:  ASSSEFGGSH--------SSSVGG---ACFKCGRPGHWARDCS
              G  H         S  GG   AC+KCG+ GH+AR+CS
Subjt:  ASSSEFGGSH--------SSSVGG---ACFKCGRPGHWARDCS

P27484 Glycine-rich protein 23.5e-0851.85Show/hide
Query:  CFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        CFKCG  GH+ARDCSQS          FGG      GG C+KCG  GH+AR+C+
Subjt:  CFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

Q04832 DNA-binding protein HEXBP5.1e-0727.23Show/hide
Query:  GDGSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAPSSDLQCPCG
        G  +CF+CG+ GH +RDC      S    +A   +   CG          + +   R  Y    R  +G  G +    +   T      A      CP G
Subjt:  GDGSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAPSSDLQCPCG

Query:  AG---TCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVY--GNTNDTSKSIPVIARTGS----CFKCGGEGHWARDCSQSYAPSNAS
         G       RT     +AG     CP+ Q              +     + Y  G +   S+  P    TGS    C+KCG  GH +R+C          
Subjt:  AG---TCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVY--GNTNDTSKSIPVIARTGS----CFKCGGEGHWARDCSQSYAPSNAS

Query:  SSEFGGSHSSSVGG---ACFKCGRPGHWARDCSGS
          E GGS+  S GG    C+KCG  GH +RDC  S
Subjt:  SSEFGGSHSSSVGG---ACFKCGRPGHWARDCSGS

Q94C69 Cold shock domain-containing protein 38.6e-0726.87Show/hide
Query:  KSEGDGSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPC-GLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNAS--ATNVSQNHAPSSD
        +S G+G C+ CG +GH+ARDC  +G   G +S        PC   G    L  +     G   Y     + +GG G +  C      A +  QN      
Subjt:  KSEGDGSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPC-GLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNAS--ATNVSQNHAPSSD

Query:  LQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSNASSSE
             G G         V   G   Y C       G           +V  S++        +         +C++CGG GH ARDC +       S S 
Subjt:  LQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSNASSSE

Query:  FGGSHSSSVGGACFKCGRPGHWARDCS
         GG  S+     CF CG+ GH+AR+C+
Subjt:  FGGSHSSSVGGACFKCGRPGHWARDCS

Q9NG98 DNA topoisomerase 3-alpha1.7e-0725.26Show/hide
Query:  NRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQN---HAPSS--------------------------------------------------------D
        N GR +Y+CP   E   C FF+W D   ++  S+N    AP S                                                        +
Subjt:  NRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQN---HAPSS--------------------------------------------------------D

Query:  LQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYG--NTNDTSKSIPVI-----ARTGSCFKCGGEGHWARDC
        + C CG     +   K   N G+ FY CP+ + SCGFF+W  E  +NQ ++S  +G  N N   +S P        +T  C  C  EGH    C
Subjt:  LQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYG--NTNDTSKSIPVI-----ARTGSCFKCGGEGHWARDC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 36.1e-0826.87Show/hide
Query:  KSEGDGSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPC-GLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNAS--ATNVSQNHAPSSD
        +S G+G C+ CG +GH+ARDC  +G   G +S        PC   G    L  +     G   Y     + +GG G +  C      A +  QN      
Subjt:  KSEGDGSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPC-GLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNAS--ATNVSQNHAPSSD

Query:  LQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSNASSSE
             G G         V   G   Y C       G           +V  S++        +         +C++CGG GH ARDC +       S S 
Subjt:  LQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSNASSSE

Query:  FGGSHSSSVGGACFKCGRPGHWARDCS
         GG  S+     CF CG+ GH+AR+C+
Subjt:  FGGSHSSSVGGACFKCGRPGHWARDCS

AT3G42860.1 zinc knuckle (CCHC-type) family protein1.8e-5247.78Show/hide
Query:  DKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCD----NASATNVSQNHAPSSDL-----QCPCGAGTCIIRTAKTVENAGQQFYCCPS
        +K+CPCG+G C +LT+NT +N GR+FY+CP R+ENGGCGFF+WCD    + ++T  S ++   +D      QCPCGAG C + TAKT EN G+QFY CP 
Subjt:  DKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCD----NASATNVSQNHAPSSDL-----QCPCGAGTCIIRTAKTVENAGQQFYCCPS

Query:  YQASCGFFQWCKEPSKNQVSASEVYGNTN--DTSKSIPVIARTGS-CFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS
        ++ SCGFF+WC +   +  ++  V  N+N  D+       A+TG+ C+KCG EGHWARDC+          S+ G   S+S  G CFKCG+PGHW+RDC+
Subjt:  YQASCGFFQWCKEPSKNQVSASEVYGNTN--DTSKSIPVIARTGS-CFKCGGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCS

Query:  GSS
          S
Subjt:  GSS

AT4G36020.1 cold shock domain protein 13.8e-1028.81Show/hide
Query:  AKSEGDGS-CFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAP--SS
        A+  G GS C+ CG+LGH ++DC   G G G +  +   + C                      Y C      G  G F   D  SA N  Q  A    +
Subjt:  AKSEGDGS-CFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAP--SS

Query:  DLQCPCGAGTCIIR--TAKTVENAGQQFYCCPSYQA--SCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSN
        D    CG    + R  T K+V N  Q+           +CG           +V+A  V                +G+C+ CGG GH ARDC+    PS 
Subjt:  DLQCPCGAGTCIIR--TAKTVENAGQQFYCCPSYQA--SCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSN

Query:  ASSSEFGGSH--------SSSVGG---ACFKCGRPGHWARDCS
              G  H         S  GG   AC+KCG+ GH+AR+CS
Subjt:  ASSSEFGGSH--------SSSVGG---ACFKCGRPGHWARDCS

AT5G13920.1 GRF zinc finger / Zinc knuckle protein7.0e-2038.64Show/hide
Query:  GSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAPSSDLQCPCGAG
        G CF+C + GHW  DC    + S  D    A + CPCG G C +  ANT  N GR+FY+CP  Q    C FF+WCD  +  ++    A +  + C CGAG
Subjt:  GSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYRCPVRQENGGCGFFEWCDNASATNVSQNHAPSSDLQCPCGAG

Query:  TCIIRTAKTVENAGQQFYCCPSYQASCGFFQW
         C  R  K V        C      +CGFF+W
Subjt:  TCIIRTAKTVENAGQQFYCCPSYQASCGFFQW

AT5G63920.1 topoisomerase 3alpha3.0e-0733.33Show/hide
Query:  SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSNASS
        S + C      C++RTA T  N G+QF+ CP+    C FF W  E S N  S +   G+ +  S       R GS     G G   R   QS      S 
Subjt:  SDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKCGGEGHWARDCSQSYAPSNASS

Query:  SEFGGSHSSSVGG-ACFKCGRPGHWARDC
        + F  +    V G  CF CG P H+A  C
Subjt:  SEFGGSHSSSVGG-ACFKCGRPGHWARDC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATCGCGGCGGTTTCCGGCGAAGCTTCTCCTTCTTCAGCTGCGAAAGTGCTCTACATTGGCATTGCAAGAAAGCCCTAATCTCATCTCTCAAATTTCCGGCCACAA
AGGGCTCATTTCCGCCACCACTACGGCTAAATCGGAGGGCGATGGTTCGTGCTTCAAGTGCGGGAAATTAGGGCATTGGGCTAGAGACTGCTCCACTACCGGAGTCGGTT
CCGGGAATGATTCGTCGGCTGTTGCGGACAAAGCATGCCCCTGTGGATTGGGAGCTTGTTCTGTTCTAACTGCGAATACGGAGCGGAATCGAGGCCGGAGATTTTACAGA
TGTCCCGTTCGTCAGGAAAATGGGGGCTGTGGATTCTTTGAGTGGTGTGACAATGCTTCTGCAACTAATGTAAGCCAAAATCATGCACCAAGTTCAGACCTTCAGTGCCC
ATGTGGTGCTGGTACTTGCATAATTCGAACAGCCAAAACAGTGGAAAATGCTGGTCAACAATTCTATTGTTGCCCTTCGTACCAGGCATCATGTGGGTTTTTCCAGTGGT
GCAAGGAGCCTTCTAAGAACCAAGTGAGTGCCTCTGAGGTTTATGGTAACACAAATGACACAAGCAAAAGCATTCCTGTGATTGCTAGAACTGGTTCTTGTTTTAAATGT
GGAGGTGAAGGGCATTGGGCTAGAGATTGTTCACAATCATATGCACCATCTAATGCTTCCTCTTCAGAGTTTGGTGGAAGCCATTCTTCTTCAGTTGGTGGAGCTTGTTT
CAAATGCGGCAGGCCCGGCCATTGGGCGAGGGACTGTTCGGGTTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
AATTCCCAAAAATTGATTCCTCCTCTCCCAAAAAAAAAAAAAATTGTTGTTAAAAAAATAAAAAAGAAAACTATACGTAGGAAACAAAAAGCCCTAGACGCAAAGATTCG
AAACGGTGGGTTTTCTTCCAGGGTAGCGGCGGCGGCGGCGGCGGCGGCGGAATCGTGCCCTAACCAGTAATCCCATAAGAATCCCCAAAAAATGCTATCGCGGCGGTTTC
CGGCGAAGCTTCTCCTTCTTCAGCTGCGAAAGTGCTCTACATTGGCATTGCAAGAAAGCCCTAATCTCATCTCTCAAATTTCCGGCCACAAAGGGCTCATTTCCGCCACC
ACTACGGCTAAATCGGAGGGCGATGGTTCGTGCTTCAAGTGCGGGAAATTAGGGCATTGGGCTAGAGACTGCTCCACTACCGGAGTCGGTTCCGGGAATGATTCGTCGGC
TGTTGCGGACAAAGCATGCCCCTGTGGATTGGGAGCTTGTTCTGTTCTAACTGCGAATACGGAGCGGAATCGAGGCCGGAGATTTTACAGATGTCCCGTTCGTCAGGAAA
ATGGGGGCTGTGGATTCTTTGAGTGGTGTGACAATGCTTCTGCAACTAATGTAAGCCAAAATCATGCACCAAGTTCAGACCTTCAGTGCCCATGTGGTGCTGGTACTTGC
ATAATTCGAACAGCCAAAACAGTGGAAAATGCTGGTCAACAATTCTATTGTTGCCCTTCGTACCAGGCATCATGTGGGTTTTTCCAGTGGTGCAAGGAGCCTTCTAAGAA
CCAAGTGAGTGCCTCTGAGGTTTATGGTAACACAAATGACACAAGCAAAAGCATTCCTGTGATTGCTAGAACTGGTTCTTGTTTTAAATGTGGAGGTGAAGGGCATTGGG
CTAGAGATTGTTCACAATCATATGCACCATCTAATGCTTCCTCTTCAGAGTTTGGTGGAAGCCATTCTTCTTCAGTTGGTGGAGCTTGTTTCAAATGCGGCAGGCCCGGC
CATTGGGCGAGGGACTGTTCGGGTTCTTCGTAATAAAGGTATGACCCCTCTTGCTGCTTCTGCAATAGGACTGTGTTTTCAAGCTTTTTTTTTTGGCTGTTGTTTAAGCT
TGTAAGTCCAGTATAAATCTCCTGACATTTTTATGTTAACATTTGCTTCACTTGACTTGATGGGGGGATTGGTTTTGTTAGCTAAAAGTTTTTTTTTTTTAAAACAAAAA
TATTTGATTTGCAATATTCCATAATTTAAAGAATCCGAGTTTAGTTCCGTGGTTTTCACCTTTGGAGAAACTTTTTATTTTATTTTTTGTATTTGTATCTATGTCAGTTT
GCACGCACCTTGATTATTATAAAGGAG
Protein sequenceShow/hide protein sequence
MLSRRFPAKLLLLQLRKCSTLALQESPNLISQISGHKGLISATTTAKSEGDGSCFKCGKLGHWARDCSTTGVGSGNDSSAVADKACPCGLGACSVLTANTERNRGRRFYR
CPVRQENGGCGFFEWCDNASATNVSQNHAPSSDLQCPCGAGTCIIRTAKTVENAGQQFYCCPSYQASCGFFQWCKEPSKNQVSASEVYGNTNDTSKSIPVIARTGSCFKC
GGEGHWARDCSQSYAPSNASSSEFGGSHSSSVGGACFKCGRPGHWARDCSGSS