CuGenDBv2

Gene ID	Sed0023611
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S13
Genome location	LG09:907256..910912
RNA-Seq Expression	Sed0023611
Synteny	Sed0023611
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF3433118.1 hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis]

2.1e-76

98.01

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_010053902.1 40S ribosomal protein S13 [Eucalyptus grandis]

2.1e-76

98.01

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_010101741.2 40S ribosomal protein S13 [Morus notabilis]

7.2e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_012829904.1 PREDICTED: 40S ribosomal protein S13 [Erythranthe guttata]

7.2e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_017423846.1 PREDICTED: 40S ribosomal protein S13-like [Vigna angularis]

1.6e-76

98.01

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

TrEMBL top hits

e value

%identity

Alignment

A0A022Q8L1 Ribosomal_S13_N domain-containing protein

3.5e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A218X097 40S ribosomal protein S13

1.0e-76

98.01

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A2P5ADI8 Ribosomal protein

1.0e-76

98.01

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A2R6R6F9 40S ribosomal protein S13

3.5e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1DES0 40S ribosomal protein S13

3.5e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

1.1e-75

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKISSQDVDE ICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59223 40S ribosomal protein S13-1

2.4e-75

93.38

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKG+TPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59224 40S ribosomal protein S13-2

6.3e-76

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKG+TPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P62302 40S ribosomal protein S13

2.3e-78

96.69

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Q69UI1 40S ribosomal protein S13-2

5.7e-69

86.75

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DV+E I K AKKG  PSQIGV+LRD +GI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

1.7e-76

93.38

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKG+TPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

AT4G00100.1 ribosomal protein S13A

4.5e-77

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKG+TPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTCGTATGCACAGTCGAGGAAAGGGTATTTCAGCTTCAGCACTGCCTTACAAGAGGACTCCACCAAGTTGGTTGAAGATCTCTTCTCAGGATGTTGACGAGAACAT
TTGCAAATTTGCCAAGAAGGGTATGACACCATCTCAAATTGGCGTAATTCTTCGTGATTCTTATGGGATTGCTCAAGTCAAAAGTGTAACTGGGAGCAAGATTTTGCGCA
TATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCTGAGGATCTTTATCATCTCATCAAGAAAGCTGTATCAATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGAT
TCCAAATTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATGAATCTACCACGGCCAG
CACCCTCGTGGCTTAG

mRNA sequence

Show/hide mRNA sequence

GATATAACTAATTATGGTCCGGGTTGGGTAGAGGCCCAGCCCAAAGTGGACGGCAAATCCCCAAAAGCATAACCAAAACCCTAAAAGCCGCCATTGTTTTACAGTGTTCA
TCAAAAGAGCTTAGCAGAGTGTAAGGCGTCTTCTTCTCCACGCGCCGCCGCCGCCGCCGCCGCCATGGGTCGTATGCACAGTCGAGGAAAGGGTATTTCAGCTTCAGCAC
TGCCTTACAAGAGGACTCCACCAAGTTGGTTGAAGATCTCTTCTCAGGATGTTGACGAGAACATTTGCAAATTTGCCAAGAAGGGTATGACACCATCTCAAATTGGCGTA
ATTCTTCGTGATTCTTATGGGATTGCTCAAGTCAAAAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCTGAGGATCTTTA
TCATCTCATCAAGAAAGCTGTATCAATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGATTCCAAATTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGG
CCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATGAATCTACCACGGCCAGCACCCTCGTGGCTTAGAAGCAAGTTTTTGGCGATCTAAGGATTTAT
TTTGGCGATGCAACTTTCCATCAAGGATTGTGTTTAATATGTTATCAATACACTCACATGCAATTGTTCATCTTGTGCCCTCACTATGAAATCATTCAAGTTTTGATACA
CTCTTAATGCAAATTTGATTTATGCAATTCTTTTAAACCATTCATGATGATGATCATTTATCTGAGAAA

Protein sequence

Show/hide protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sed0023611 (gene) of Chayote v1 genome