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Sed0023620 (gene) of Chayote v1 genome

Gene IDSed0023620
OrganismSechium edule (Chayote v1)
DescriptionNucleotid_trans domain-containing protein
Genome locationLG08:34611829..34615355
RNA-Seq ExpressionSed0023620
SyntenySed0023620
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
InterPro domainsIPR013865 - Protein FAM32A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137395.2 uncharacterized protein LOC101213981 [Cucumis sativus]6.3e-4482.35Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDP++GAKGGRLTFKGGV+ASRSK IDKKKKKKKKDK+KTDENP  + EILT ADG + G G  +YTIDAAKRMKYEELFPVET+KFGYDPNN NTK K
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVEDAL+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

XP_008438568.1 PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo]9.7e-4584.03Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDP+AGAKGGRLTFKGGV+ASRSK IDKKKKKKKKDK KTDENP  + EILT ADG +GG G  +YTIDAAKRMKYEELFPVET+KFGYDPNN NTK K
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVEDAL+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

XP_022137706.1 uncharacterized protein LOC111009076 [Momordica charantia]1.4e-4382.64Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKK--DKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTK
        MSDPFAGAKGGRLTFKGGV+ASRSKAIDKKKKKKKK  DK+++D+NP  E EIL+ AD  DGG  G+VYTIDAAKRMKYEELFPVETKKFGYDPNN NTK
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKK--DKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTK

Query:  LKSVEDALNDRVKKKADRYCK
         KSVE+AL+DRVKKKADRYCK
Subjt:  LKSVEDALNDRVKKKADRYCK

XP_023524446.1 uncharacterized protein LOC111788363 [Cucurbita pepo subsp. pepo]6.3e-4484.87Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDPFAGAKGGRLTFKGGV+ASRSKAID KKKKKKK K+K DENP  E EIL+ ADG DGG  G+VYTIDAAKRMKYEELFPVETKKFGYDPNN NTKLK
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVE++L+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

XP_038893643.1 uncharacterized protein LOC120082512 [Benincasa hispida]1.8e-4381.51Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDP+AG KGGRLTFKGGV+ASRSK IDKKKKKKKKDK+KT+ENP  E EIL+ ADG +GG G  +YTIDAAKRMKYEELFPVET+KFGYDPNN NTK K
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVE+AL+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

TrEMBL top hitse value%identityAlignment
A0A0A0LVD6 Uncharacterized protein3.1e-4482.35Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDP++GAKGGRLTFKGGV+ASRSK IDKKKKKKKKDK+KTDENP  + EILT ADG + G G  +YTIDAAKRMKYEELFPVET+KFGYDPNN NTK K
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVEDAL+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

A0A1S3AWC8 uncharacterized protein LOC1034836014.7e-4584.03Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDP+AGAKGGRLTFKGGV+ASRSK IDKKKKKKKKDK KTDENP  + EILT ADG +GG G  +YTIDAAKRMKYEELFPVET+KFGYDPNN NTK K
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVEDAL+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

A0A5A7SXI8 Uncharacterized protein4.7e-4584.03Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDP+AGAKGGRLTFKGGV+ASRSK IDKKKKKKKKDK KTDENP  + EILT ADG +GG G  +YTIDAAKRMKYEELFPVET+KFGYDPNN NTK K
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVEDAL+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

A0A6J1C7F9 uncharacterized protein LOC1110090766.8e-4482.64Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKK--DKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTK
        MSDPFAGAKGGRLTFKGGV+ASRSKAIDKKKKKKKK  DK+++D+NP  E EIL+ AD  DGG  G+VYTIDAAKRMKYEELFPVETKKFGYDPNN NTK
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKK--DKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTK

Query:  LKSVEDALNDRVKKKADRYCK
         KSVE+AL+DRVKKKADRYCK
Subjt:  LKSVEDALNDRVKKKADRYCK

A0A6J1KIE4 uncharacterized protein LOC1114955201.3e-4280.67Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK
        MSDP++GAKGGRLTFKGGV+ASRSK IDKKKKKKKKDK+K+DENP  E EIL+ ADG + G  G VYTIDAAKRMKYEELFPVET+KFGYDPNN +TK K
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLK

Query:  SVEDALNDRVKKKADRYCK
        SVE+AL+DRVKKKADRYCK
Subjt:  SVEDALNDRVKKKADRYCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25720.1 unknown protein4.1e-2554.47Show/hide
Query:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGG----DVYTIDAAKRMKYEELFPVETKKFGYDPNNPN
        MSDP+    GGRL FKGG +A+R     KKKKK+KK+K K D    +ED   T  DG    A      D+Y+IDAAK+ KY++LFPVE KKFGY    P 
Subjt:  MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGG----DVYTIDAAKRMKYEELFPVETKKFGYDPNNPN

Query:  TKLKSVEDALNDRVKKKADRYCK
           +S EDAL+DRVKKKADRYCK
Subjt:  TKLKSVEDALNDRVKKKADRYCK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGATCCATTTGCAGGGGCGAAAGGGGGAAGGCTCACCTTCAAGGGCGGAGTCGTAGCCTCCCGCAGCAAAGCCATCGACAAGAAGAAAAAGAAGAAGAAGAAAGA
TAAAGCTAAAACCGACGAGAATCCGCCGATCGAGGACGAGATTTTGACGCCGGCCGACGGCGATGACGGCGGAGCCGGCGGCGATGTGTATACGATTGACGCGGCCAAGC
GTATGAAGTACGAGGAGCTGTTTCCGGTGGAGACGAAGAAGTTTGGTTATGATCCTAACAACCCTAATACTAAGCTCAAGTCTGTGGAGGATGCTCTCAATGACCGCGTA
AAGAAGAAGGCGGATCGTTATTGTAAATAA
mRNA sequenceShow/hide mRNA sequence
GGCTAATTGGCAATTGGGCCAAAGAAGAACAAAATGAGAAGATAATATAATTCCCAATCATAGATCCCATTGTCGTCTCATCTCTGTAAGCATCAATAATTTCATCCCGC
CGGCGCGCATCAACCAACCTGAAGGTCTGGCCGAGCGAGGAACCAACCTCAAAGGCCATTGAAGACGCGCAACAATGTCGGATCCATTTGCAGGGGCGAAAGGGGGAAGG
CTCACCTTCAAGGGCGGAGTCGTAGCCTCCCGCAGCAAAGCCATCGACAAGAAGAAAAAGAAGAAGAAGAAAGATAAAGCTAAAACCGACGAGAATCCGCCGATCGAGGA
CGAGATTTTGACGCCGGCCGACGGCGATGACGGCGGAGCCGGCGGCGATGTGTATACGATTGACGCGGCCAAGCGTATGAAGTACGAGGAGCTGTTTCCGGTGGAGACGA
AGAAGTTTGGTTATGATCCTAACAACCCTAATACTAAGCTCAAGTCTGTGGAGGATGCTCTCAATGACCGCGTAAAGAAGAAGGCGGATCGTTATTGTAAATAATCAGCC
TGCAGGCCTTGGTCCTTATGGAACTACTAAGATTCCGGGATTTCTTGCAGCGATGCGCATCCATCACGCTCCCTAAGTCACTAAGCCTCGGATTTGTAGCTTTATGGTAT
GGTATAATATATATATATATATATATAGACTCTTGAGCTCATTACAATTGTTTTTTTTTGTTTTTTTTTTTAGTGGGATCAAGCTGATTGTAGTTACTTTTTTCCCTTCA
ATAGTTTTTCTCTTTGTAGCAGCTGACTAACACAAGAATATGACTTTATGTTTGGTATGGATGTGTAGTTTTTATGGTATATAGTAATCTTCTTGACTTTCATAAAAGCC
TTTATAATGGTCTTATGCTGGTTAAAGTTAGGGGCGGGAAACGCTTTAAAGGAATATGAGATTTGTCTTCATATCTATCTTTGAACTTCCGTTCATTTATTGGCT
Protein sequenceShow/hide protein sequence
MSDPFAGAKGGRLTFKGGVVASRSKAIDKKKKKKKKDKAKTDENPPIEDEILTPADGDDGGAGGDVYTIDAAKRMKYEELFPVETKKFGYDPNNPNTKLKSVEDALNDRV
KKKADRYCK