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Sed0023654 (gene) of Chayote v1 genome

Gene IDSed0023654
OrganismSechium edule (Chayote v1)
DescriptionEukaryotic translation initiation factor 3 subunit G
Genome locationLG06:38608143..38608536
RNA-Seq ExpressionSed0023654
SyntenySed0023654
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0032991 - protein-containing complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034240 - eIF3G, RNA recognition motif
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036126.1 eukaryotic translation initiation factor 3 subunit G-like [Cucumis melo var. makuwa]2.2e-4463.25Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA RSI+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

KAG6607041.1 Eukaryotic translation initiation factor 3 subunit G, partial [Cucurbita argyrosperma subsp. sororia]4.8e-4462.65Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA R+I+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

XP_004145638.1 eukaryotic translation initiation factor 3 subunit G [Cucumis sativus]8.3e-4462.65Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQK GMSRGFGFVNFVN +DA RSI+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

XP_008461580.1 PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Cucumis melo]2.2e-4463.25Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA RSI+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

XP_022949274.1 eukaryotic translation initiation factor 3 subunit G-like [Cucurbita moschata]4.8e-4462.65Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA R+I+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

TrEMBL top hitse value%identityAlignment
A0A1S3CGB5 Eukaryotic translation initiation factor 3 subunit G1.1e-4463.25Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA RSI+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

A0A5A7T1M6 Eukaryotic translation initiation factor 3 subunit G1.1e-4463.25Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA RSI+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

A0A5D3DVQ7 Eukaryotic translation initiation factor 3 subunit G1.1e-4463.25Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA RSI+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

A0A6J1GCD4 Eukaryotic translation initiation factor 3 subunit G2.3e-4462.65Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA R+I+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

A0A6J1KBW4 Eukaryotic translation initiation factor 3 subunit G2.3e-4462.65Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV
        GSKPEEPK AGDPLAQLGKGGA LMVCRT                                                     ERT TDMRRRNDENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCRT----------------------------------------------------GERTETDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTREPDLLELFRPFGAVSRVYVA+DQKTGMSRGFGFVNFVN +DA R+I+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

SwissProt top hitse value%identityAlignment
Q28CY2 Eukaryotic translation initiation factor 3 subunit G1.6e-2146.46Show/hide
Query:  TGSKPE----EPKAAGDPLAQLGK--------GGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGF
        TG K +    EP+ A  P+++ GK        GG+     R GE  + + RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Subjt:  TGSKPE----EPKAAGDPLAQLGK--------GGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGF

Query:  GFVNFVNHQDAHRSISKLNGYGYDNLI
         F++F   +DA R+I+ ++G+GYD+LI
Subjt:  GFVNFVNHQDAHRSISKLNGYGYDNLI

Q3ZC12 Eukaryotic translation initiation factor 3 subunit G1.0e-2055.17Show/hide
Query:  RTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        R GE  + + RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F   +DA R+I+ ++G+GYD+LI
Subjt:  RTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

Q641B2 Eukaryotic translation initiation factor 3 subunit G-B1.6e-2147.86Show/hide
Query:  EPKAAGDPLAQLGK--------GGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQD
        EP+ A  P+++ GK        GG+     R GE  + + RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F   +D
Subjt:  EPKAAGDPLAQLGK--------GGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQD

Query:  AHRSISKLNGYGYDNLI
        A R+I+ ++G+GYD+LI
Subjt:  AHRSISKLNGYGYDNLI

Q6DJI8 Eukaryotic translation initiation factor 3 subunit G-A1.6e-2146.46Show/hide
Query:  TGSKPE----EPKAAGDPLAQLGK--------GGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGF
        TG K +    EP+ A  P+++ GK        GG+     R GE  + + RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Subjt:  TGSKPE----EPKAAGDPLAQLGK--------GGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGF

Query:  GFVNFVNHQDAHRSISKLNGYGYDNLI
         F++F   +DA R+I+ ++G+GYD+LI
Subjt:  GFVNFVNHQDAHRSISKLNGYGYDNLI

Q6DRC4 Eukaryotic translation initiation factor 3 subunit G7.8e-2155.17Show/hide
Query:  RTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        R GE  + + RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF F++F   +DA R+I+ ++G+GYD+LI
Subjt:  RTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

Arabidopsis top hitse value%identityAlignment
AT1G54080.1 oligouridylate-binding protein 1A5.4e-0940.51Show/hide
Query:  TGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNG
        TG+R +T     +   ++ V +LS +  +  L + F  F + S   V  DQKTG SRGFGFV+F N QDA  +I+++NG
Subjt:  TGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNG

AT3G11400.1 eukaryotic translation initiation factor 3G12.2e-3953.22Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCR------------------------------TGERTE---------------------------TDMRRRNDE
        G+K +E KA GD L+QLGKGGA LMVCR                              TGE +                            +DMRRRNDE
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCR------------------------------TGERTE---------------------------TDMRRRNDE

Query:  NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        NSVRVTNLSEDTREPDL+ELF PFGAV+RVYVA+DQKTG+SRGFGFVNFV+ +DA R+I+KLNGYGYDNLI
Subjt:  NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

AT3G11400.2 eukaryotic translation initiation factor 3G18.5e-3952.94Show/hide
Query:  SKPEEPKAAGDPLAQLGKGGAALMVCR------------------------------TGERTE---------------------------TDMRRRNDEN
        +K +E KA GD L+QLGKGGA LMVCR                              TGE +                            +DMRRRNDEN
Subjt:  SKPEEPKAAGDPLAQLGKGGAALMVCR------------------------------TGERTE---------------------------TDMRRRNDEN

Query:  SVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        SVRVTNLSEDTREPDL+ELF PFGAV+RVYVA+DQKTG+SRGFGFVNFV+ +DA R+I+KLNGYGYDNLI
Subjt:  SVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI

AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.0e-0940.51Show/hide
Query:  TGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNG
        TG+R +T     +   ++ V +LS +  +  L + F  F + S   V  DQKTG SRGFGFV+F N QDA  +I+++NG
Subjt:  TGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNG

AT5G06000.1 eukaryotic translation initiation factor 3G21.8e-3348.8Show/hide
Query:  GSKPEEPKAAGDPLAQLGKGGAALMVCR--------------------------TGERTE--------------------------TDMRRRNDENSVRV
        GS  E+   +GD ++QLGK GA LMVCR                          T E +                           +DMR R+DENSVRV
Subjt:  GSKPEEPKAAGDPLAQLGKGGAALMVCR--------------------------TGERTE--------------------------TDMRRRNDENSVRV

Query:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI
        TNLSEDTR PDL+ELFRPFGAV+R +VA+DQKT MSRGFGFV+FV+ +DA R+I+KLNGYGYDNLI
Subjt:  TNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTACAGGTAGCAAACCAGAGGAGCCAAAGGCTGCTGGAGACCCTTTAGCTCAACTTGGAAAAGGCGGAGCTGCCCTTATGGTATGTCGAACTGGTGAGAGGACTGA
AACTGACATGAGACGTAGGAACGACGAAAACTCCGTTCGTGTCACCAACCTCTCAGAAGACACTAGAGAGCCTGACTTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTA
GCAGAGTTTATGTTGCTCTTGATCAAAAGACTGGCATGAGCAGGGGATTTGGTTTTGTAAACTTTGTGAACCACCAGGATGCACATAGATCAATTAGCAAACTCAATGGA
TATGGTTATGATAATCTCATTAAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTACAGGTAGCAAACCAGAGGAGCCAAAGGCTGCTGGAGACCCTTTAGCTCAACTTGGAAAAGGCGGAGCTGCCCTTATGGTATGTCGAACTGGTGAGAGGACTGA
AACTGACATGAGACGTAGGAACGACGAAAACTCCGTTCGTGTCACCAACCTCTCAGAAGACACTAGAGAGCCTGACTTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTA
GCAGAGTTTATGTTGCTCTTGATCAAAAGACTGGCATGAGCAGGGGATTTGGTTTTGTAAACTTTGTGAACCACCAGGATGCACATAGATCAATTAGCAAACTCAATGGA
TATGGTTATGATAATCTCATTAAGAGTTGA
Protein sequenceShow/hide protein sequence
MITGSKPEEPKAAGDPLAQLGKGGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNG
YGYDNLIKS