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Sed0023701 (gene) of Chayote v1 genome

Gene IDSed0023701
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG04:3606107..3608512
RNA-Seq ExpressionSed0023701
SyntenySed0023701
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591893.1 Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4075.21Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD+A K LR+VT+ATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNK+LKKTMWDWKQ+L+++AS++S LVPL+RIKAIYGEAP+SPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLM
        A  A T D+NSQGSKLM
Subjt:  AGNATTEDSNSQGSKLM

XP_022140674.1 uncharacterized protein LOC111011272 [Momordica charantia]8.5e-4177.31Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPI-SPS
        MDMA K LR++TNA+NN T+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKALKK+MWDWKQ+LFAEASSES LVPL+RIKAIYGE PI SP+
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPI-SPS

Query:  GAGNATTEDSNSQGSKLMV
        GAG+A TED NSQGSK +V
Subjt:  GAGNATTEDSNSQGSKLMV

XP_022937146.1 uncharacterized protein LOC111443531 [Cucurbita moschata]3.8e-4175.42Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD+A K LR+VT+ATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNK+LKKTMWDWKQ+L+++AS++S LVPL+RIKAIYGEAP+SPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLMV
        A  A T D+NSQGSKLMV
Subjt:  AGNATTEDSNSQGSKLMV

XP_022976887.1 uncharacterized protein LOC111477117 [Cucurbita maxima]2.2e-4175.42Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD+A+K LR++TNATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKALKKTMWDWKQ+L++EAS++S L+PL+RIKAIY EAP+SPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLMV
        A  A T D+NSQGSKLMV
Subjt:  AGNATTEDSNSQGSKLMV

XP_038897052.1 uncharacterized protein LOC120085226 [Benincasa hispida]1.8e-4380.51Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD+A+K LR+VTNATNNNT+INVCLVLSFGALS RSI QQ +I+ALEA+K SLL SNKALKKTMWDWKQ+LFAEAS++S LVPL+RIKAIYGEAPISPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLMV
         G+  TED+NSQGSKLMV
Subjt:  AGNATTEDSNSQGSKLMV

TrEMBL top hitse value%identityAlignment
A0A0A0L380 Uncharacterized protein6.3e-3478Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD A+K LRS+ NATN NTVINVCLV+SF AL+ RSI Q+ QI+ALE +K+SLL SNKALKKTMWDWKQ+LFAEAS+ES LVPL+RIKAIYGEAPISPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

A0A1S3B9R7 uncharacterized protein LOC1034875832.5e-3873.73Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD+A+K LR ++N  N NT+INVCLV SF ALS RSI Q+ QI+ALEA+K+SLL SNKALKKTMWDWKQ+LFAEAS++S LVPL+RIKAIYGEAPISPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLMV
        A NA TED+ S+ SKLMV
Subjt:  AGNATTEDSNSQGSKLMV

A0A6J1CGB8 uncharacterized protein LOC1110112724.1e-4177.31Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPI-SPS
        MDMA K LR++TNA+NN T+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKALKK+MWDWKQ+LFAEASSES LVPL+RIKAIYGE PI SP+
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPI-SPS

Query:  GAGNATTEDSNSQGSKLMV
        GAG+A TED NSQGSK +V
Subjt:  GAGNATTEDSNSQGSKLMV

A0A6J1F9J6 uncharacterized protein LOC1114435311.8e-4175.42Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD+A K LR+VT+ATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNK+LKKTMWDWKQ+L+++AS++S LVPL+RIKAIYGEAP+SPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLMV
        A  A T D+NSQGSKLMV
Subjt:  AGNATTEDSNSQGSKLMV

A0A6J1IGY3 uncharacterized protein LOC1114771171.1e-4175.42Show/hide
Query:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG
        MD+A+K LR++TNATNNNT+INVCLV+SFGALS RSI QQ +I+ALEA+KDSLL SNKALKKTMWDWKQ+L++EAS++S L+PL+RIKAIY EAP+SPSG
Subjt:  MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLMV
        A  A T D+NSQGSKLMV
Subjt:  AGNATTEDSNSQGSKLMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48200.1 unknown protein1.3e-2349.15Show/hide
Query:  MAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASS--ESPLVPLSRIKAIYGEAPISPSG
        MA KI   ++ A NNN VIN CL +SF  L +RS  QQ  ++AL   K+SL +SNKA+K TMW+WKQ+LFAEA+S   + +VPLS +KAIYGE   + + 
Subjt:  MAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASS--ESPLVPLSRIKAIYGEAPISPSG

Query:  AGNATTEDSNSQGSKLMV
        +G+   EDS     K+M+
Subjt:  AGNATTEDSNSQGSKLMV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGGCGGCCAAAATTCTTCGCAGTGTAACGAACGCAACGAACAACAACACCGTCATCAACGTCTGTTTGGTCCTTTCCTTTGGGGCACTGAGCGTAAGATCCAT
CAACCAGCAGACACAAATCGACGCTCTGGAGGCCGACAAAGATTCGCTTCTCCGTTCCAACAAAGCCTTGAAGAAAACCATGTGGGATTGGAAGCAACGCCTTTTCGCCG
AAGCTTCGTCGGAATCGCCTTTAGTCCCCCTCTCCAGGATCAAAGCCATCTACGGCGAAGCTCCCATTTCCCCTTCCGGAGCTGGAAATGCGACAACCGAGGATTCAAAT
TCACAAGGCTCCAAACTTATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
GGGTTCTTGAAGGTTGGTTGCAGAATGGACATGGCGGCCAAAATTCTTCGCAGTGTAACGAACGCAACGAACAACAACACCGTCATCAACGTCTGTTTGGTCCTTTCCTT
TGGGGCACTGAGCGTAAGATCCATCAACCAGCAGACACAAATCGACGCTCTGGAGGCCGACAAAGATTCGCTTCTCCGTTCCAACAAAGCCTTGAAGAAAACCATGTGGG
ATTGGAAGCAACGCCTTTTCGCCGAAGCTTCGTCGGAATCGCCTTTAGTCCCCCTCTCCAGGATCAAAGCCATCTACGGCGAAGCTCCCATTTCCCCTTCCGGAGCTGGA
AATGCGACAACCGAGGATTCAAATTCACAAGGCTCCAAACTTATGGTTTAATGTTAGTTTCCTCTTGTTTCTGTTTCCTTCAATCTGGAAATTGATGATGAGTTAAAAAT
TCATTTAAGTTGCATAATTGTTTGTTTTGAGGCCCAGAAAAGTAATGAAGAGTACAAGGAATTAGACTTTTATTTTTCATTTGACATTAGTCCCTTGAGAATTAAACATC
CAATTGAAAATATTATCAAAATTGAAAAATGCAGCAG
Protein sequenceShow/hide protein sequence
MDMAAKILRSVTNATNNNTVINVCLVLSFGALSVRSINQQTQIDALEADKDSLLRSNKALKKTMWDWKQRLFAEASSESPLVPLSRIKAIYGEAPISPSGAGNATTEDSN
SQGSKLMV