CuGenDBv2

Gene ID	Sed0023714
Organism	Sechium edule (Chayote v1)
Description	protein PLASTID TRANSCRIPTIONALLY ACTIVE 7
Genome location	LG13:303283..305450
RNA-Seq Expression	Sed0023714
Synteny	Sed0023714
Gene Ontology terms	GO:0042793 - plastid transcription (biological process) GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038958 - Protein plastid transcriptionally active 7

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576638.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-76

88.48

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Query:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
        M+TPIPTL FA+P I+  AGIS  FNFPPRLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
Subjt:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF

Query:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        DFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

KAG7014690.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucurbita argyrosperma subsp. argyrosperma]

7.3e-75

86.9

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Query:  MSTPIPTLRFATPI---IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED
        M+TPIPTL FA+P+   I+  AGIS  FNFPPRLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MSTPIPTLRFATPI---IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

XP_022923078.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 [Cucurbita moschata]

9.6e-75

87.27

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Query:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
        M+TPIPTL FA+P I+  AG+S  FNFP RLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
Subjt:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF

Query:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        DFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

XP_022984517.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 [Cucurbita maxima]

1.5e-75

87.88

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Query:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
        M++PIPTL FA+P I+  AGIS  FNFPPRLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
Subjt:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF

Query:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        DFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

XP_023553428.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2 [Cucurbita pepo subsp. pepo]

2.5e-75

87.27

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Query:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
        M+TPIPTL FA+P I+  AGIS  FNFPPRLQ+ ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
Subjt:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF

Query:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        DFVNEVAAEAK+YVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CJC0 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

6.3e-72

85.63

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Query:  MSTPIPTLRF-ATPI--IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED
        MSTPIPTL F ++P+  IE  AGIS  FNFPPR +V+ARKQR  +  GRRVWRRRKL KKD MSHY MDR PFLEEQVRKVKEQGKL+TMDIERLLLSED
Subjt:  MSTPIPTLRF-ATPI--IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEF
        NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEF
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEF

A0A6J1E559 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

5.1e-74

85.71

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Query:  MSTPIPTLRFATPI---IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED
        M+TPIPTL FA+P+   I+  AG+S  FNFP RLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MSTPIPTLRFATPI---IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

A0A6J1E8L1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2

4.6e-75

87.27

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Query:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
        M+TPIPTL FA+P I+  AG+S  FNFP RLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
Subjt:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF

Query:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        DFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

A0A6J1J2D6 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2

7.2e-76

87.88

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Query:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
        M++PIPTL FA+P I+  AGIS  FNFPPRLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSEDNRF
Subjt:  MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRF

Query:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        DFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  DFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

A0A6J1J5H1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

7.9e-75

86.31

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Query:  MSTPIPTLRFATPI---IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED
        M++PIPTL FA+P+   I+  AGIS  FNFPPRLQV ARKQRDG+ VGRRVWRRRKLTKKD MS + MDR PFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MSTPIPTLRFATPI---IEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

SwissProt top hits

e value

%identity

Alignment

Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

2.0e-46

65.36

Show/hide

Query:  PIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKE
        PII+  +G  R      + QV    QRD    GRRVWRRR LTKKD M  Y M R PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA E
Subjt:  PIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKE

Query:  YVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        YV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL E +T
Subjt:  YVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

Arabidopsis top hits

e value

%identity

Alignment

AT5G24314.1 plastid transcriptionally active7

1.4e-47

65.36

Show/hide

Query:  PIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKE
        PII+  +G  R      + QV    QRD    GRRVWRRR LTKKD M  Y M R PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA E
Subjt:  PIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKE

Query:  YVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
        YV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL E +T
Subjt:  YVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

AT5G24314.2 plastid transcriptionally active7

2.2e-45

62.11

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Query:  PIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRK--------LTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVN
        PII+  +G  R      + QV    QRD    GRRVWRRR         LTKKD M  Y M R PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN
Subjt:  PIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRK--------LTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVN

Query:  EVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT
         VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL E +T
Subjt:  EVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTACTCCAATTCCGACACTGCGTTTTGCTACACCGATCATAGAGGTGTGGGCGGGAATTTCTCGTGCCTTTAACTTTCCTCCGCGGTTACAGGTCATCGCCAGGAA
GCAAAGAGATGGTCAAAGTGTTGGCCGGCGAGTGTGGCGACGAAGGAAATTGACGAAGAAGGATCATATGTCGCATTACACAATGGATCGAACCCCGTTCCTAGAAGAAC
AGGTAAGGAAGGTAAAGGAACAGGGGAAGCTGATAACAATGGACATCGAAAGACTACTATTATCCGAGGACAACCGGTTCGATTTTGTGAATGAGGTTGCAGCGGAGGCT
AAGGAATATGTGGAGAGCAACCGTGATGAATATGGGGGTTCGAAGAAAGCTATTCTTCACGTTCTTAGCAACCGGGTGAATGATGCAGGGTTCTATAGGCCGGATGCATA
TGCAGAAGAGGACCCATTTAAACCCGGCCCCCATTATCTGAAAGAAGAATTTACTTGA

mRNA sequence

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CCGAAAATGAAGATAGCACACAGCGATGAGTACTCCAATTCCGACACTGCGTTTTGCTACACCGATCATAGAGGTGTGGGCGGGAATTTCTCGTGCCTTTAACTTTCCTC
CGCGGTTACAGGTCATCGCCAGGAAGCAAAGAGATGGTCAAAGTGTTGGCCGGCGAGTGTGGCGACGAAGGAAATTGACGAAGAAGGATCATATGTCGCATTACACAATG
GATCGAACCCCGTTCCTAGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTGATAACAATGGACATCGAAAGACTACTATTATCCGAGGACAACCGGTTCGATTT
TGTGAATGAGGTTGCAGCGGAGGCTAAGGAATATGTGGAGAGCAACCGTGATGAATATGGGGGTTCGAAGAAAGCTATTCTTCACGTTCTTAGCAACCGGGTGAATGATG
CAGGGTTCTATAGGCCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGCCCCCATTATCTGAAAGAAGAATTTACTTGAAGAAGATTATTACAAAATCCATTTTCT
TACAATAAAGACTGCCAGAATATTAATCTGCTATTCCCAATTTTTAAATGTTGGCCCTTTTAGTATATTTCTCTTCTGATTGATGCATGTAAGGTCCGTTTTTGCTTACC
CTTTATTAGGGAATGACAAAGACAAACCATACTAAAGTCGAGACATTTGAGAAACTGACTACTTGCTCCTAGCCAAACTTTTTAGGGATGATGAATCAGATATTTGCATT
TTCATTTTTCTTATATGTAACAAAGCTTTCCTACTTATTTCTTGCAATCCCCATTAAATGGACATGAATAAAAGA

Protein sequence

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MSTPIPTLRFATPIIEVWAGISRAFNFPPRLQVIARKQRDGQSVGRRVWRRRKLTKKDHMSHYTMDRTPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFT

Sed0023714 (gene) of Chayote v1 genome