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Sed0023716 (gene) of Chayote v1 genome

Gene IDSed0023716
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:40842197..40844531
RNA-Seq ExpressionSed0023716
SyntenySed0023716
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QHO14044.1 Putative ribonuclease H protein [Arachis hypogaea]2.8e-0934.95Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        W+PP    +K+NVD +     GR G G + R+  G+C+  F    IG   +VAAE VA+R G+ +AW+ G+R+VE E D      ++   +    E   I
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  IDE
        ++E
Subjt:  IDE

QHO42494.1 Putative ribonuclease H protein [Arachis hypogaea]1.7e-0934.95Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        W+PP    +K+NVD +     GR G G + R+  G+C+  F    IG   +VAAE VA+R G+ +AW+ G+R+VE E+D      ++   +    E   I
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  IDE
        ++E
Subjt:  IDE

XP_021766484.1 uncharacterized protein LOC110730920 [Chenopodium quinoa]4.0e-1133.6Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        WIPP+  I K+N+DAA+ S++G+  +G++ R+ +GD + S  KP+  +   + AEA A   G+  A++ GFR++E+ TD   +  +L+S+S   + V  I
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  IDESLIFAANKFIGSFSFEDGCDGK
        + ++L   +      FSF   C  K
Subjt:  IDESLIFAANKFIGSFSFEDGCDGK

XP_023880097.1 uncharacterized protein LOC111992470 [Quercus suber]3.7e-0935.29Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        W+PP     K+N D A+ S+ G  GIGV+ RN  G  M S  K I   L A+  EA AV +G+ +AW+LG +++ LE+D+ +V   ++  S   + +  +
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  ID
        ++
Subjt:  ID

XP_030945916.1 uncharacterized protein LOC115970418 [Quercus lobata]2.2e-0933.9Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        W PP+G+  K N D A+ S+ G  GIGV+ RN+ G+ + +  + I+        EA+A R  +    ELGF   E E D++ V   L+S   G + +G I
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  IDESLIFAANKFIGSFSF
        + + +       IGS SF
Subjt:  IDESLIFAANKFIGSFSF

TrEMBL top hitse value%identityAlignment
A0A2N9HTD1 Uncharacterized protein8.9e-0937.62Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        W  P   IVK+N D A   Q+  TGIGVI R+S G  +        G+  A   EA+A+++G ++A E+G   + +E+D Q V L +QS+ +    VG I
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  I
        I
Subjt:  I

A0A5C7IIT4 Uncharacterized protein1.8e-0933.9Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        W P      K+N DA +  +   TGIGV+ R+ YG  M S C+   G L     EAVAV  G  +A E G     +E+D+ +V  ++ S      E+G +
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  IDESLIFAANKFIGSFSF
        + + L   +N F  S SF
Subjt:  IDESLIFAANKFIGSFSF

A0A7J8LRX5 RNase H domain-containing protein5.2e-0939.76Show/hide
Query:  VKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRS
        VK+N DAA+   +GR   G + RN  G C+  FC+  +G  + + AEA  + DG+ +AW+LG+R+VE E+DN  +  +LQ  +
Subjt:  VKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRS

A0A7N2LIH6 Uncharacterized protein7.3e-1143.18Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQ
        W PP+ D  KVNVDAA+  ++G  GIGV+ RN+ G  M +  K ++  L A+ AEA A   GI++AW+LG + + +E D Q V   L+
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQ

A0A803KV00 Uncharacterized protein1.9e-1133.6Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI
        WIPP+  I K+N+DAA+ S++G+  +G++ R+ +GD + S  KP+  +   + AEA A   G+  A++ GFR++E+ TD   +  +L+S+S   + V  I
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGI

Query:  IDESLIFAANKFIGSFSFEDGCDGK
        + ++L   +      FSF   C  K
Subjt:  IDESLIFAANKFIGSFSFEDGCDGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.4e-0834.44Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSR
        W  P  + VK N D +  +    +G+  I RNS G C+   C    G      AE  A+   I  AW+LG+RRVE E DN  V  +++++
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSR

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.0e-0430.11Show/hide
Query:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSF--CKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRS
        W PP   +VK+N+          T    I R+  G  +F +  C   I E+V   A  +A+  G+   W+ GFRR+ LET +  +   L ++S
Subjt:  WIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSF--CKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGATCCCGCCTATTGGTGATATAGTTAAAGTTAATGTTGATGCAGCAATTTGTAGTCAGGAGGGAAGGACCGGAATCGGGGTAATCGCACGAAATTCTTATGG
GGATTGTATGTTTTCTTTTTGCAAACCTATCATTGGGGAGTTAGTGGCTGTAGCTGCAGAAGCCGTGGCTGTTCGTGATGGAATTATGATGGCGTGGGAGTTGGGGTTCA
GGCGGGTTGAGTTGGAAACTGATAATCAAGCGGTTGCCCTTATGCTTCAATCACGATCTTTTGGGACAACGGAGGTGGGGGGGATTATTGATGAATCTTTGATTTTTGCA
GCGAACAAATTCATTGGCTCATTCTCTTTCGAAGATGGCTGCGATGGAAAATTTGAATATTTATGTGATGGAGGACGGTCCAGAAGCTCTTCAGAATGGACTTCTTTCAG
AAAAACCTCGAAACGGCGAATTTCGCGGGGATGGGGACGGGGAGGGCATTCCTCAACCCCACCCCACTGCGTGAACATCTCTAAATCCCACCACCAAAAACAAATTCGAT
CACGAACAATAAATACACCCTACAAGAGATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGATCCCGCCTATTGGTGATATAGTTAAAGTTAATGTTGATGCAGCAATTTGTAGTCAGGAGGGAAGGACCGGAATCGGGGTAATCGCACGAAATTCTTATGG
GGATTGTATGTTTTCTTTTTGCAAACCTATCATTGGGGAGTTAGTGGCTGTAGCTGCAGAAGCCGTGGCTGTTCGTGATGGAATTATGATGGCGTGGGAGTTGGGGTTCA
GGCGGGTTGAGTTGGAAACTGATAATCAAGCGGTTGCCCTTATGCTTCAATCACGATCTTTTGGGACAACGGAGGTGGGGGGGATTATTGATGAATCTTTGATTTTTGCA
GCGAACAAATTCATTGGCTCATTCTCTTTCGAAGATGGCTGCGATGGAAAATTTGAATATTTATGTGATGGAGGACGGTCCAGAAGCTCTTCAGAATGGACTTCTTTCAG
AAAAACCTCGAAACGGCGAATTTCGCGGGGATGGGGACGGGGAGGGCATTCCTCAACCCCACCCCACTGCGTGAACATCTCTAAATCCCACCACCAAAAACAAATTCGAT
CACGAACAATAAATACACCCTACAAGAGATGTTAA
Protein sequenceShow/hide protein sequence
MGWIPPIGDIVKVNVDAAICSQEGRTGIGVIARNSYGDCMFSFCKPIIGELVAVAAEAVAVRDGIMMAWELGFRRVELETDNQAVALMLQSRSFGTTEVGGIIDESLIFA
ANKFIGSFSFEDGCDGKFEYLCDGGRSRSSSEWTSFRKTSKRRISRGWGRGGHSSTPPHCVNISKSHHQKQIRSRTINTPYKRC