; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0023852 (gene) of Chayote v1 genome

Gene IDSed0023852
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG12:33411213..33414106
RNA-Seq ExpressionSed0023852
SyntenySed0023852
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR027370 - RING-type zinc-finger, LisH dimerisation motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06338.1 uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa]1.4e-7276.11Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSL
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+AISSH +RM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDRSDPPCPLCT++   ++D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

XP_008443927.1 PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo]4.9e-7376.67Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSL
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDRSDPPCPLCT++   ++D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

XP_016899782.1 PREDICTED: uncharacterized protein LOC103487402 isoform X1 [Cucumis melo]1.3e-7376.09Show/hide
Query:  MFCPNVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIM
        M C    G+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI 
Subjt:  MFCPNVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIM

Query:  YNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        YNSLGK+AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDRSDPPCPLCT++   ++D
Subjt:  YNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

XP_022134599.1 uncharacterized protein LOC111006826 [Momordica charantia]6.4e-7377.22Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQMDV S EDQSL+RPVFMKRSRHQYSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  + I+ I +TF GPERI Y+SL
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+AISSHG+RMLCGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHADCLE RS VEDRSDPPCPLCTE    I+D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

XP_038878632.1 uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida]6.0e-7174.44Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPNT--YRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQMDVRS ED+S +RPVFMKRSRHQYSHQYCRRGS S  N    R NRV T+ EERPAFKF AHCNSE  D I+ I  TF GPERI YNS 
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPNT--YRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+A SSHGMRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRS+VEDRSDPPCPLC E    ++D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

TrEMBL top hitse value%identityAlignment
A0A1S3B956 uncharacterized protein LOC103487402 isoform X22.4e-7376.67Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSL
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDRSDPPCPLCT++   ++D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

A0A1S4DUW7 uncharacterized protein LOC103487402 isoform X16.3e-7476.09Show/hide
Query:  MFCPNVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIM
        M C    G+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI 
Subjt:  MFCPNVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIM

Query:  YNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        YNSLGK+AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDRSDPPCPLCT++   ++D
Subjt:  YNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

A0A5A7U906 RING-type domain-containing protein2.4e-7376.67Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSL
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDRSDPPCPLCT++   ++D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

A0A5D3C5B4 RING-type domain-containing protein6.9e-7376.11Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSL
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+AISSH +RM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDRSDPPCPLCT++   ++D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

A0A6J1BZ68 uncharacterized protein LOC1110068263.1e-7377.22Show/hide
Query:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL
        +++G+VPFSNQMDV S EDQSL+RPVFMKRSRHQYSHQYCRRGS SQ N  T R NRV T+ EERPAFKF AHCNSE  + I+ I +TF GPERI Y+SL
Subjt:  NVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSL

Query:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED
        GK+AISSHG+RMLCGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHADCLE RS VEDRSDPPCPLCTE    I+D
Subjt:  GKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19680.1 RING/U-box superfamily protein1.7e-1034.88Show/hide
Query:  GPERIMYNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMEL
        G  R+   S  + + S    +  CG C KL+  +     + ++  + P+ AVL CGHVYHA CLE  ++  ++ DP CP+CTE ++
Subjt:  GPERIMYNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMEL

AT1G75400.1 RING/U-box superfamily protein2.0e-1143.55Show/hide
Query:  RMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT
        + +CG C KL+  +     +++++ E P+AAVL CGHVYHA+CLE  ++  ++ DP CP+CT
Subjt:  RMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT

AT4G39140.1 RING/U-box superfamily protein4.8e-1038.75Show/hide
Query:  LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT
        L ++ I  HG RM       CG C + L ++ L        ++E  V+A+L CGHVYH +CLE  +   D+ DP CP+CT
Subjt:  LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT

AT4G39140.2 RING/U-box superfamily protein4.8e-1038.75Show/hide
Query:  LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT
        L ++ I  HG RM       CG C + L ++ L        ++E  V+A+L CGHVYH +CLE  +   D+ DP CP+CT
Subjt:  LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT

AT4G39140.3 RING/U-box superfamily protein4.8e-1038.75Show/hide
Query:  LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT
        L ++ I  HG RM       CG C + L ++ L        ++E  V+A+L CGHVYH +CLE  +   D+ DP CP+CT
Subjt:  LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATTTGAGTTCTATTTCTTTAGACCTGATGTGTTTTATTCTGATTTTCTTATGTTTTGTCCGAATGTTGCAGGTATAGTGCCCTTTTCCAATCAAATGGATGT
GCGGTCGGTAGAGGATCAGAGTCTTTCCCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAGCCATCAATATTGTCGCCGAGGTTCAGCTAGTCAACCAAATACAT
ACCGTGGAAATCGAGTCAGTACCATACATGAAGAGCGGCCCGCCTTTAAATTTGGTGCTCATTGCAACTCAGAGACTTCAGACCGTATAGATGGCATTGGGAGCACCTTC
TTGGGGCCAGAAAGGATAATGTACAATTCCCTGGGGAAGAATGCAATTTCATCTCATGGAATGAGAATGCTATGTGGGATTTGTCATAAGCTGATGAAACGAAAGCTTTG
CTTCCTCGGCAACACGCTGTCTTCCCATGAACCTCCTGTAGCTGCGGTTTTGGTCTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAGCGTCGAAGACA
GGAGCGATCCACCTTGTCCATTGTGCACGGAGATGGAGCTGCCTATCGAAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATCCGTAGCAACTAGAAGAGTAACCTCATCCACCGGGTTTGTGTTTCAAAGCAAATAATCCCATTCATTAAATTCAATTTAAGCACCTGATTACATTAATCCTCGATTTA
TGAACAATCTTAATTACAATGGGAAAGCGCAAGCGAGGATCTGATCACACCTTCCCCGATCGTCCTCCTCATCTCTCTGGTATGATCTCTCCTAAACCCCATCATGCTCT
GTTTCTGTTCGAAGAAATGTCTCAATGAAATCAATTATTCCTCTGCGTCGATACACAGTTTTTGTTCTCTGAAATGTCGCTCCAGACCATCAAATCGCTTTGTTTGAGCT
TTGAAATGGATGGGGGCCCTTTTGGGGATATGGGTTTTGTTAGTAATTGCCATTTTTGGAAATTCAAATTGGGTCTATGAGAGTTTTGTGAGATGGGGTTTTAATGGATG
GGCATATTATGATTAATCTCACTCATTTGGTTACTCTTCAATACCTCTTGAAATGGATACATTTGAGTTCTATTTCTTTAGACCTGATGTGTTTTATTCTGATTTTCTTA
TGTTTTGTCCGAATGTTGCAGGTATAGTGCCCTTTTCCAATCAAATGGATGTGCGGTCGGTAGAGGATCAGAGTCTTTCCCGTCCAGTATTCATGAAACGTTCACGTCAT
CAGTATAGCCATCAATATTGTCGCCGAGGTTCAGCTAGTCAACCAAATACATACCGTGGAAATCGAGTCAGTACCATACATGAAGAGCGGCCCGCCTTTAAATTTGGTGC
TCATTGCAACTCAGAGACTTCAGACCGTATAGATGGCATTGGGAGCACCTTCTTGGGGCCAGAAAGGATAATGTACAATTCCCTGGGGAAGAATGCAATTTCATCTCATG
GAATGAGAATGCTATGTGGGATTTGTCATAAGCTGATGAAACGAAAGCTTTGCTTCCTCGGCAACACGCTGTCTTCCCATGAACCTCCTGTAGCTGCGGTTTTGGTCTGT
GGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAGCGTCGAAGACAGGAGCGATCCACCTTGTCCATTGTGCACGGAGATGGAGCTGCCTATCGAAGACTGAAA
AGGAGAACAGGAATGAGTTGAATGTACATATGTTATCAAATCACACCAACAATAGGAATTAGGATTGCCTTTGACTTGAATGGATAGCTGGAAACTTGGAGTTTTCGCAT
CATCGACTGTTTTTCCATGAACTAATCTGTGTTTTCTGGATGGATGTGCAGAAAAGGAAAATAGTTGCCTTAAACCATAACCATACAGAAAATAGCGATAACGAGTCTTC
GAAAAATGACAGCAAATTGTGCTCCATAGATTGGTTTTTGTGTAGAAGTAGACTGATTGGTACAAGTCCGTTTGTTACCTTCTAGATTTTTGTTATCTAGCAGCAGAGGA
ATTTAGTTGAAACATTATGTACTTTAGAGCAATGTCTAAAACAGTATATTTTAGAAACAATATATGTGGGG
Protein sequenceShow/hide protein sequence
MDTFEFYFFRPDVFYSDFLMFCPNVAGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPNTYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTF
LGPERIMYNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED