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Sed0023870 (gene) of Chayote v1 genome

Gene IDSed0023870
OrganismSechium edule (Chayote v1)
Descriptionzf-RVT domain-containing protein
Genome locationLG06:9293633..9296877
RNA-Seq ExpressionSed0023870
SyntenySed0023870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012837526.1 PREDICTED: uncharacterized protein LOC105958069 [Erythranthe guttata]5.9e-0641.03Show/hide
Query:  ERGFQLITR----SQFNDRNLMVADIITED-GWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR
        E  F++ TR    S + DR   VADII +  G WD+  ++EI W +D   +L+IP+   +  DRW+WH+S +G F+VR
Subjt:  ERGFQLITR----SQFNDRNLMVADIITED-GWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR

XP_012849884.1 PREDICTED: uncharacterized protein LOC105969657 [Erythranthe guttata]7.7e-0642.86Show/hide
Query:  FNDRNLMVADIITE-DGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR
        F DR   V+DII +    W++D + E +W VDI+ + A+P+C     D+W+WH S+NG FSV+
Subjt:  FNDRNLMVADIITE-DGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR

XP_012851712.1 PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata]2.4e-0740.54Show/hide
Query:  VADII-TEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRV----LINLRWKEISRKR
        V+DII  E G WD+  + E+ W VD++ +LA+P+      DRWIWHFS++G+F+VR     +++     +SR+R
Subjt:  VADII-TEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRV----LINLRWKEISRKR

XP_012853800.1 PREDICTED: uncharacterized protein LOC105973324 [Erythranthe guttata]2.2e-0541.33Show/hide
Query:  FQLITR----SQFNDRNLMVADIITE-DGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR
        FQ+ITR    S F D+   VAD+I      W+++ ++E  W +D + +L +PI      DRW+WH+S+NG FSVR
Subjt:  FQLITR----SQFNDRNLMVADIITE-DGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR

XP_012857846.1 PREDICTED: uncharacterized protein LOC105977118 [Erythranthe guttata]2.4e-0740.54Show/hide
Query:  VADII-TEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRV----LINLRWKEISRKR
        V+DII  E G WD+  + E+ W VD++ +LA+P+      DRWIWHFS++G+F+VR     +++     +SR+R
Subjt:  VADII-TEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRV----LINLRWKEISRKR

TrEMBL top hitse value%identityAlignment
A0A2I0A354 Ribonuclease H protein1.4e-0535.71Show/hide
Query:  FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR
        FQ IT    N     + +++TEDG W+ +K+  ILW +D   +L +P C ++  D  IWH+ + G +SV+
Subjt:  FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR

A0A2P5BYC7 Uncharacterized protein1.1e-0541.27Show/hide
Query:  QFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR
        +  D +L+V+D+ ++ G WD +K+K ILWLVD  +VL +P+      D  IWHF  N + SV+
Subjt:  QFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR

A0A453F0C4 zf-RVT domain-containing protein4.1e-0540.62Show/hide
Query:  SQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR
        S+  D  L+VAD+IT +  WD+DK+ +I    D   + AIP+C  Q  D W W   +NG F+V+
Subjt:  SQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVR

A0A6J1BRN0 uncharacterized protein LOC1110047871.9e-0536.49Show/hide
Query:  FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRVLIN
        F+ IT + F   ++ VAD+I  +G WD+  +  I    D D +L++P+     VD WIWHF + G ++V+ +IN
Subjt:  FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRVLIN

A0A803P1Q0 Uncharacterized protein1.9e-0532.63Show/hide
Query:  ISNKLAVANIQPLTERG-FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRVLINLRW
        + +KL ++       RG FQ ITR + ND +  V++ I   G WD  K++ +   +D+D +L+IP+ K +  D W WH+  +G ++V+   +L W
Subjt:  ISNKLAVANIQPLTERG-FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRVLINLRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTGAAAGTGAAAGGGAAAAGACCTTCACTAGTAAAAGGAAGATGGAGTCTGATTTTGATAATGGTGGATTTGGAAAGAAGATACGTACTAGTGAAGGGGATGC
TATTTCTAATAAGTTGGCGGTGGCTAATATTCAACCCCTCACAGAGAGAGGTTTCCAGCTTATCACTCGTTCGCAGTTTAATGACAGAAACTTGATGGTTGCTGATATCA
TAACAGAAGATGGTTGGTGGGACATTGATAAAATGAAAGAAATTTTATGGCTGGTTGATATTGATGATGTTTTAGCCATTCCTATATGTAAATCGCAAGAAGTCGATAGG
TGGATTTGGCACTTTTCTCGTAATGGGGATTTCTCTGTTCGAGTGCTTATAAACTTGCGATGGAAAGAAATAAGCAGGAAGAGGTTTCTGGAAATAAAGCCATTAAAAAA
TGGTGGAGTTTGCTTTGGAAGATTAATGTTCCTAATAAAATCAAACTTTTCATTTGGAGGCTCTACAATGATATCTTCCCAATTTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTGAAAGTGAAAGGGAAAAGACCTTCACTAGTAAAAGGAAGATGGAGTCTGATTTTGATAATGGTGGATTTGGAAAGAAGATACGTACTAGTGAAGGGGATGC
TATTTCTAATAAGTTGGCGGTGGCTAATATTCAACCCCTCACAGAGAGAGGTTTCCAGCTTATCACTCGTTCGCAGTTTAATGACAGAAACTTGATGGTTGCTGATATCA
TAACAGAAGATGGTTGGTGGGACATTGATAAAATGAAAGAAATTTTATGGCTGGTTGATATTGATGATGTTTTAGCCATTCCTATATGTAAATCGCAAGAAGTCGATAGG
TGGATTTGGCACTTTTCTCGTAATGGGGATTTCTCTGTTCGAGTGCTTATAAACTTGCGATGGAAAGAAATAAGCAGGAAGAGGTTTCTGGAAATAAAGCCATTAAAAAA
TGGTGGAGTTTGCTTTGGAAGATTAATGTTCCTAATAAAATCAAACTTTTCATTTGGAGGCTCTACAATGATATCTTCCCAATTTTCATAA
Protein sequenceShow/hide protein sequence
MEFESEREKTFTSKRKMESDFDNGGFGKKIRTSEGDAISNKLAVANIQPLTERGFQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDR
WIWHFSRNGDFSVRVLINLRWKEISRKRFLEIKPLKNGGVCFGRLMFLIKSNFSFGGSTMISSQFS