CuGenDBv2

Gene ID	Sed0023875
Organism	Sechium edule (Chayote v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
Genome location	LG04:35424858..35427832
RNA-Seq Expression	Sed0023875
Synteny	Sed0023875
Gene Ontology terms	NA
InterPro domains	IPR014848 - Reduced growth phenotype protein 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_023514696.1 uncharacterized protein LOC111778917 [Cucurbita pepo subsp. pepo]

7.5e-22

88.24

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM
        MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQK SGMLMEEGQN   Q D F WK+M
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM

XP_023514696.1 uncharacterized protein LOC111778917 [Cucurbita pepo subsp. pepo]

3.9e-02

95.83

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Query:  LETSETVSRRFVHPSRKNSPTIVK
        LETSETVSRRFVHPSR+NSPTIVK
Subjt:  LETSETVSRRFVHPSRKNSPTIVK

XP_023514696.1 uncharacterized protein LOC111778917 [Cucurbita pepo subsp. pepo]

7.5e-22

91.53

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQND
        MYYVKSTLLGRWL QENGRS KESL+DQIEME RVPLQVWVTQKT+GMLMEEGQNGQND
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQND

XP_038904898.1 uncharacterized protein LOC120091119 isoform X1 [Benincasa hispida]

4.7e-24

34.02

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQNDGF----LWKQM------------------------------
        MYYVKSTLLGRWL QENGRS KESL+DQIEME RVPLQVWVTQKT+GMLMEEGQNGQND F     WK+M                              
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQNDGF----LWKQM------------------------------

Query:  -----------------------------------------------------------------------SSAVVSSSQVLNFEKDQSTDNDAG-----
                                                                               S A VS SQVLNFEK+QSTD+DAG     
Subjt:  -----------------------------------------------------------------------SSAVVSSSQVLNFEKDQSTDNDAG-----

Query:  -------------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK
                                                                           LETSETVSRRF+HPSR+NSPTIVK
Subjt:  -------------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK

XP_038904900.1 uncharacterized protein LOC120091119 isoform X3 [Benincasa hispida]

4.7e-24

34.02

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQNDGF----LWKQM------------------------------
        MYYVKSTLLGRWL QENGRS KESL+DQIEME RVPLQVWVTQKT+GMLMEEGQNGQND F     WK+M                              
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQNDGF----LWKQM------------------------------

Query:  -----------------------------------------------------------------------SSAVVSSSQVLNFEKDQSTDNDAG-----
                                                                               S A VS SQVLNFEK+QSTD+DAG     
Subjt:  -----------------------------------------------------------------------SSAVVSSSQVLNFEKDQSTDNDAG-----

Query:  -------------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK
                                                                           LETSETVSRRF+HPSR+NSPTIVK
Subjt:  -------------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK

XP_038904901.1 uncharacterized protein LOC120091119 isoform X4 [Benincasa hispida]

4.7e-24

34.02

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQNDGF----LWKQM------------------------------
        MYYVKSTLLGRWL QENGRS KESL+DQIEME RVPLQVWVTQKT+GMLMEEGQNGQND F     WK+M                              
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQNDGF----LWKQM------------------------------

Query:  -----------------------------------------------------------------------SSAVVSSSQVLNFEKDQSTDNDAG-----
                                                                               S A VS SQVLNFEK+QSTD+DAG     
Subjt:  -----------------------------------------------------------------------SSAVVSSSQVLNFEKDQSTDNDAG-----

Query:  -------------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK
                                                                           LETSETVSRRF+HPSR+NSPTIVK
Subjt:  -------------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0L6 Uncharacterized protein

3.1e-21

33.92

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQMSS------------------------------
        MYYVKSTLLGRWL QENGRS KES KDQIEMEAR+PLQVWVTQKT+GMLMEEGQN   Q D F WK+M S                              
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQMSS------------------------------

Query:  --------------------------------------------------------------------AVVSSSQVLNFEKDQSTDNDAG----------
                                                                            A VS SQVLNFEK+QSTD+DAG          
Subjt:  --------------------------------------------------------------------AVVSSSQVLNFEKDQSTDNDAG----------

Query:  --------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK
                                                                      LETSETVSRRF+HPSR+NSPTIVK
Subjt:  --------------------------------------------------------------LETSETVSRRFVHPSRKNSPTIVK

A0A6J1H364 uncharacterized protein LOC111460073

1.9e-02

95.83

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Query:  LETSETVSRRFVHPSRKNSPTIVK
        LETSETVSRRFVHPSR+NSPTIVK
Subjt:  LETSETVSRRFVHPSRKNSPTIVK

A0A6J1HKY7 uncharacterized protein LOC111464493

3.1e-21

86.76

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM
        MYYVKSTLLGRWLIQENGRSR ESLKDQIEMEARVPLQVWVTQK SGMLMEEGQN   Q D F WK+M
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM

A0A6J1HKY7 uncharacterized protein LOC111464493

1.9e-02

95.83

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Query:  LETSETVSRRFVHPSRKNSPTIVK
        LETSETVSRRFVHPSR+NSPTIVK
Subjt:  LETSETVSRRFVHPSRKNSPTIVK

A0A6J1HKY7 uncharacterized protein LOC111464493

6.9e-21

83.82

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM
        MYYVKSTLLG+WL QENGRS KESLKDQIEMEARVPLQVWVTQKT+GMLMEEGQN   Q D F WK+M
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM

A0A6J1KC17 uncharacterized protein LOC111494236

3.7e-22

88.24

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM
        MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQK SGMLMEEGQN   Q D F WK+M
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNG--QNDGFLWKQM

A0A6J1KC17 uncharacterized protein LOC111494236

1.9e-02

95.83

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Query:  LETSETVSRRFVHPSRKNSPTIVK
        LETSETVSRRFVHPSR+NSPTIVK
Subjt:  LETSETVSRRFVHPSRKNSPTIVK

A0A6J1KC17 uncharacterized protein LOC111494236

6.2e-22

79.17

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLM--EEGQNGQNDGF----LWKQM
        MYYVKSTL GRWLIQENGRS KESLKD+I+MEAR+PLQVWVTQKTSGMLM  EEGQNG+ND F     WK+M
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLM--EEGQNGQNDGF----LWKQM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

4.0e-13

57.41

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Query:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQ
        +YY+KSTL GRW+  EN +  K+S +D IE+E R+PLQVWV QK +G+L+EE Q
Subjt:  MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQ

2.6e-04

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Query:  LETSETVSRRFVHPSRKNSPTIVK
        LET ET++RRFVHPSR+NSPT+ K
Subjt:  LETSETVSRRFVHPSRKNSPTIVK

Sequences

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CDS sequence

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ATGTATTATGTTAAAAGTACATTACTAGGACGATGGCTAATACAGGAAAATGGTCGATCTCGTAAAGAGTCGCTGAAGGATCAAATAGAAATGGAAGCTCGGGTTCCATT
ACAAGTATGGGTCACTCAGAAAACCAGTGGGATGCTAATGGAAGAAGGTCAAAATGGTCAAAATGATGGTTTTCTGTGGAAACAGATGTCATCTGCAGTTGTCTCTTCCA
GCCAGGTGTTGAACTTTGAGAAGGATCAGTCAACAGATAATGATGCTGGATTGGAGACTTCAGAGACTGTATCACGCCGTTTTGTCCATCCTTCTCGGAAGAACTCTCCA
ACGATTGTTAAGTCGGCGAATCAATGCTCACCCAACAATTGCGTATTAATAATACGATTTCAATATTGA

mRNA sequence

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Protein sequence

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MYYVKSTLLGRWLIQENGRSRKESLKDQIEMEARVPLQVWVTQKTSGMLMEEGQNGQNDGFLWKQMSSAVVSSSQVLNFEKDQSTDNDAGLETSETVSRRFVHPSRKNSP
TIVKSANQCSPNNCVLIIRFQY

Sed0023875 (gene) of Chayote v1 genome