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Sed0023910 (gene) of Chayote v1 genome

Gene IDSed0023910
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG02:39869794..39871335
RNA-Seq ExpressionSed0023910
SyntenySed0023910
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH84017.1 zinc CCHC-type-like protein [Trifolium medium]1.3e-2439.6Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        NLF+  F+ K   E V +  PW +D +L++  +++G ++ SELE    +FW+R++D+PL   +E  A+KLG +LG +   D + D    GKF+R+++S+D
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV
        +R PL+R  KL       + WV   YE+LP FC  CGRIGH    C  V
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]3.7e-2439.6Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        NLF+  F+ K   E V +  PW +D +L++   ++G ++ SELE    +FW+R++D+PL   +E  A+KLG +LG +   D + D    GKF+R+++S+D
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV
        +R PL+R  KL       + WV   YE+LP FC  CGRIGH    C  V
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV

TXG48811.1 hypothetical protein EZV62_024686 [Acer yangbiense]6.3e-2437.1Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        N+F+  F+N   ++R+    PW +D +LI+ E L G   +S+L F  A FW+++HD+P+ C     A+ L + +GE I   SE  +   GKF+R+K+ ID
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFVVIG----EGLVFPFGEDLREPIVYFRGEKSGIQRAGG
        I  PL+R L+LK         V + YE+L  FC  CGR+GH  S CN V       EG V  FG  LR         +S    +GG
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFVVIG----EGLVFPFGEDLREPIVYFRGEKSGIQRAGG

XP_021726128.1 uncharacterized protein LOC110693273 [Chenopodium quinoa]9.7e-2538.41Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        NLF+  F N + KE++++ SPW +D  L+L + + G ++ SE+ F     W+RL DVP +     N  ++G  LG ++  D E +    G+F+R+K+ ID
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNF--VVIGEG--LVFPFG
        I  PLRR L L  GA A  KW+ + YE+L  FC  CGR+ H +  C+F   + GEG  +V+ +G
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNF--VVIGEG--LVFPFG

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]4.8e-2433.48Show/hide
Query:  MGVNLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKI
        +G N F+ TF     K R ++  PW      ++       K + E+EF     WIR+  +P+    +  A ++G+ LGE++  D E D+   G+F+R+K+
Subjt:  MGVNLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKI

Query:  SIDIRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFVVIGEGLVFPFGEDLR--EPIVYFRGEKSGIQRAGGRGRGRGRGRGEEF
         I+I  PLRR + +  G  A E+W  I+YE LP FC  CGRIGH D  C    +  G   PFG +LR   P   F GE    Q     G GR  G G  F
Subjt:  SIDIRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFVVIGEGLVFPFGEDLR--EPIVYFRGEKSGIQRAGGRGRGRGRGRGEEF

Query:  YGQGRAFPEREAEEEDGFNRRRED
         G             D  + R++D
Subjt:  YGQGRAFPEREAEEEDGFNRRRED

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like1.8e-2439.6Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        NLF+  F+ K   E V +  PW +D +L++   ++G ++ SELE    +FW+R++D+PL   +E  A+KLG +LG +   D + D    GKF+R+++S+D
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV
        +R PL+R  KL       + WV   YE+LP FC  CGRIGH    C  V
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV

A0A392M948 Zinc CCHC-type-like protein (Fragment)6.2e-2539.6Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        NLF+  F+ K   E V +  PW +D +L++  +++G ++ SELE    +FW+R++D+PL   +E  A+KLG +LG +   D + D    GKF+R+++S+D
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV
        +R PL+R  KL       + WV   YE+LP FC  CGRIGH    C  V
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV

A0A392MB81 Zinc CCHC-type-like protein (Fragment)3.1e-2440.27Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        NLF+  F+ K   ++V +  PW +D +LI+   ++G ++ SELE    +FW+R++D+PL   +E  A+KLG  LG +   D +   R  GKF+R++  +D
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV
        +R PL+R  KLK      + WV   YE+LP FC GCGRIGH    C  V
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV

A0A803LAB8 Uncharacterized protein2.3e-2436.09Show/hide
Query:  VNLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISI
        +NLF+  F N+  KE+V++  PW +D  L++ + + G ++ SE+EF  A  W+RL DVP     +    ++G  LG ++  D + D    G+F+R+K+ I
Subjt:  VNLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISI

Query:  DIRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNF----VVIGEGLVFPFGEDLR
        DI  PLRR L L +G  +  KWV + YE+L  FC  CGR+ H +  C+F      +   +V+ +G  LR
Subjt:  DIRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNF----VVIGEGLVFPFGEDLR

A0A803MJN2 Uncharacterized protein8.0e-2537.42Show/hide
Query:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID
        NLFI  F ++  K RV+E  PW +D  L+L   ++G ++ SE+ FGI+ FWIRL DVP        A  +G+ LG +I +D + +     K++ +K+ +D
Subjt:  NLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISID

Query:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV---VIGEGLVFPFG
        I  PLRR +++ +G     KW  I YE+L  FC  CGR+ H D  C +V    + +G+V+ +G
Subjt:  IRLPLRRALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFV---VIGEGLVFPFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTAAATTTGTTTATTTGCACTTTCTCGAATAAAATAGTGAAAGAGAGGGTGGTGGAAGCGAGCCCGTGGATTTATGACGATTCGTTGATTCTGTTCGAAGCTTT
GACGGGAGGTAAAAGAGTTTCAGAGCTGGAGTTTGGAATTGCTACTTTCTGGATTAGGCTACATGATGTACCATTAGCGTGCCATACTGAAAATAATGCTAGGAAATTGG
GGAAAATGCTGGGCGAGTACATTTGCTGGGACAGTGAAGGTGATCAGCGAAACAGAGGAAAATTTATTCGGCTGAAAATTTCCATTGATATTCGACTTCCTCTGAGAAGA
GCTTTGAAGCTTAAAAGTGGTGCAATGGCTCCTGAGAAGTGGGTTCGAATCTCATACGAAAAACTACCAATTTTTTGTCGAGGTTGCGGGAGAATCGGCCATATGGATAG
CCTGTGTAATTTTGTGGTCATTGGAGAAGGACTGGTGTTCCCGTTTGGGGAAGATTTGAGAGAACCAATAGTCTACTTTAGAGGAGAAAAATCGGGGATTCAAAGAGCAG
GAGGAAGGGGACGAGGGCGTGGAAGAGGAAGAGGCGAAGAATTTTACGGCCAAGGTAGAGCTTTTCCTGAAAGAGAGGCGGAAGAAGAAGATGGGTTCAATCGAAGAAGA
GAAGATGGATTTCGAGGTGGCCATTTTCAGGCGACGATGGCCCGGAGTTCGATCGATAACGGCTCGTCGGGTTTCGTCTCGGGGAAGGGAGAGGGAAAAGTGGGAGTGAG
TCAGAGAAATCAGGCTTTTGCAGATGGTCTCGGCAAAGAGCAGGCCACGAGAATTGTTGATGACAAGTCTGAGACGGCTGATGAAACTGCGAAAGTGATTGGTCAGGGAC
AGATGGCAGGGCAACAGTGGGTTAAAAATTTTGAAAAAGGGAAAGGAAAGGTCGTTGAAGAAAGGCTTGAGGAACTTTTGTTTGGGCCTTTCGAAGTTCATTTTAAAGCC
CAAAAAAATGTGATTAATGAACACGTTTATGGGAAATGGAGTGAACCAAACAAGGGAGTGGTTATTAAGGATTTAGAGGCCAATGATTTTAATGGAAATGAAAAGTTTAA
AGCTGGAAAGAAAGAAAAATTAAAAAAGAATGGGCCGTCAGCTGAGCAGATGGATGGAATGGTCAAGAAGTATTATGACATGGTGGATTTAAAGGTTGTAAAGGAAGGGC
ATGTTCCAGAAGGTCAAAAAGAAGAATTTTCTAATTCTAAAGAAATAGAAATTGTTAAGCCGAGTGAAATTTTTTATGGAAACAGTAGAGATACAGGGGTGGAAGGAATG
GAAGTAGAAATAGAAAAGACCAGGGAAGTGGATAAAAAAATGGAAGGAGCAAATTGTAGTAAAGAAAAAGGAAAAATGTCCTTACTTAAATGGAAAAGGAAAATTCGATC
GGGAGGAAAAATGGAAGAGCGTCATATCAGTGAAGGAGAGAAAAATGATGGAGTTCTAATAGGGAAAAAACATGATATGGATCGGGTAGAAAGAGAGAATGATAGCAAAT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTAAATTTGTTTATTTGCACTTTCTCGAATAAAATAGTGAAAGAGAGGGTGGTGGAAGCGAGCCCGTGGATTTATGACGATTCGTTGATTCTGTTCGAAGCTTT
GACGGGAGGTAAAAGAGTTTCAGAGCTGGAGTTTGGAATTGCTACTTTCTGGATTAGGCTACATGATGTACCATTAGCGTGCCATACTGAAAATAATGCTAGGAAATTGG
GGAAAATGCTGGGCGAGTACATTTGCTGGGACAGTGAAGGTGATCAGCGAAACAGAGGAAAATTTATTCGGCTGAAAATTTCCATTGATATTCGACTTCCTCTGAGAAGA
GCTTTGAAGCTTAAAAGTGGTGCAATGGCTCCTGAGAAGTGGGTTCGAATCTCATACGAAAAACTACCAATTTTTTGTCGAGGTTGCGGGAGAATCGGCCATATGGATAG
CCTGTGTAATTTTGTGGTCATTGGAGAAGGACTGGTGTTCCCGTTTGGGGAAGATTTGAGAGAACCAATAGTCTACTTTAGAGGAGAAAAATCGGGGATTCAAAGAGCAG
GAGGAAGGGGACGAGGGCGTGGAAGAGGAAGAGGCGAAGAATTTTACGGCCAAGGTAGAGCTTTTCCTGAAAGAGAGGCGGAAGAAGAAGATGGGTTCAATCGAAGAAGA
GAAGATGGATTTCGAGGTGGCCATTTTCAGGCGACGATGGCCCGGAGTTCGATCGATAACGGCTCGTCGGGTTTCGTCTCGGGGAAGGGAGAGGGAAAAGTGGGAGTGAG
TCAGAGAAATCAGGCTTTTGCAGATGGTCTCGGCAAAGAGCAGGCCACGAGAATTGTTGATGACAAGTCTGAGACGGCTGATGAAACTGCGAAAGTGATTGGTCAGGGAC
AGATGGCAGGGCAACAGTGGGTTAAAAATTTTGAAAAAGGGAAAGGAAAGGTCGTTGAAGAAAGGCTTGAGGAACTTTTGTTTGGGCCTTTCGAAGTTCATTTTAAAGCC
CAAAAAAATGTGATTAATGAACACGTTTATGGGAAATGGAGTGAACCAAACAAGGGAGTGGTTATTAAGGATTTAGAGGCCAATGATTTTAATGGAAATGAAAAGTTTAA
AGCTGGAAAGAAAGAAAAATTAAAAAAGAATGGGCCGTCAGCTGAGCAGATGGATGGAATGGTCAAGAAGTATTATGACATGGTGGATTTAAAGGTTGTAAAGGAAGGGC
ATGTTCCAGAAGGTCAAAAAGAAGAATTTTCTAATTCTAAAGAAATAGAAATTGTTAAGCCGAGTGAAATTTTTTATGGAAACAGTAGAGATACAGGGGTGGAAGGAATG
GAAGTAGAAATAGAAAAGACCAGGGAAGTGGATAAAAAAATGGAAGGAGCAAATTGTAGTAAAGAAAAAGGAAAAATGTCCTTACTTAAATGGAAAAGGAAAATTCGATC
GGGAGGAAAAATGGAAGAGCGTCATATCAGTGAAGGAGAGAAAAATGATGGAGTTCTAATAGGGAAAAAACATGATATGGATCGGGTAGAAAGAGAGAATGATAGCAAAT
AA
Protein sequenceShow/hide protein sequence
MGVNLFICTFSNKIVKERVVEASPWIYDDSLILFEALTGGKRVSELEFGIATFWIRLHDVPLACHTENNARKLGKMLGEYICWDSEGDQRNRGKFIRLKISIDIRLPLRR
ALKLKSGAMAPEKWVRISYEKLPIFCRGCGRIGHMDSLCNFVVIGEGLVFPFGEDLREPIVYFRGEKSGIQRAGGRGRGRGRGRGEEFYGQGRAFPEREAEEEDGFNRRR
EDGFRGGHFQATMARSSIDNGSSGFVSGKGEGKVGVSQRNQAFADGLGKEQATRIVDDKSETADETAKVIGQGQMAGQQWVKNFEKGKGKVVEERLEELLFGPFEVHFKA
QKNVINEHVYGKWSEPNKGVVIKDLEANDFNGNEKFKAGKKEKLKKNGPSAEQMDGMVKKYYDMVDLKVVKEGHVPEGQKEEFSNSKEIEIVKPSEIFYGNSRDTGVEGM
EVEIEKTREVDKKMEGANCSKEKGKMSLLKWKRKIRSGGKMEERHISEGEKNDGVLIGKKHDMDRVERENDSK