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Sed0023913 (gene) of Chayote v1 genome

Gene IDSed0023913
OrganismSechium edule (Chayote v1)
DescriptionZinc finger matrin-type protein 2
Genome locationLG03:13567693..13570350
RNA-Seq ExpressionSed0023913
SyntenySed0023913
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW39177.1 Zinc finger matrin-type protein 2 [Vitis vinifera]8.2e-1476.19Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
RVW97943.1 Zinc finger matrin-type protein 2 [Vitis vinifera]8.2e-1476.19Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
TYJ96481.1 zinc finger matrin-type protein 2 [Cucumis melo var. makuwa]3.1e-1374.6Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
XP_002282596.2 PREDICTED: zinc finger matrin-type protein 2 isoform X1 [Vitis vinifera]8.2e-1476.19Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
XP_011648855.1 zinc finger matrin-type protein 2 [Cucumis sativus]3.1e-1374.6Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
TrEMBL top hitse value%identityAlignment
A0A1S3BWZ9 zinc finger matrin-type protein 21.5e-1374.6Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
A0A438DUK2 Zinc finger matrin-type protein 23.9e-1476.19Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
A0A438IMM2 Zinc finger matrin-type protein 23.9e-1476.19Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
A0A5D3BCY1 Zinc finger matrin-type protein 21.5e-1374.6Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
D7UA14 U1-type domain-containing protein3.9e-1476.19Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRSSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein9.6e-1361.9Show/hide
Query:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
        G+ T   +D    ++ +EEEE KR+RRE+KKEKKK K VEEEPE+DP++A MMGFGGF SSKK
Subjt:  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTAACTTTATGTTCTTTTGGTGCTATTCTTA
TTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGAAGAAGAAGAAAGGAAGCGTGAGCGTCGAG
AAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGTAGAAGAAGAGCCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATTTGGGGGCTTTCGTTCATCCAAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
TTTTTCTCCATGAATCTGTCCAAGATGAGCTTTGATTTGTGAGTGTTTATGATTCTGGAAGTAAGAACAACTTCAGTTGTGCTAACAGATTTTAAACAGTAGTTACTCTA
ATGGAAAGGATCTTTTGACTTTGTTTGCAGCTTTTCTATTTGATTATGGAAATTGTTTTGAGAACTATGATTGAATAACTTGAAAAGAAATCTAGGATTTTGGAAGCGTT
ATTAGCTGTCCAAAGGAGTTTCAGGCAACTTTCAGGAGAATTTTTATCCAAATTAATAGAAGTAATGTGCTGAAAAACACAGTCATCTAAATATATAGGATCGTTTTTGT
TCTAAAAATGTAGAATCTGCATTTTCTTTTTATTTATTGCTTGTTTATTACTTGGGTATTGAAGAACATACTGGGCCAACCCACTGATCTTTGAAGAGGTTCCACACCCT
CAAAACCAGATCAGAGAGACGCGGTTTTAGATTCTTGAATTTTTCTCTTGAGGGCACGAACATGAACCCTAAGGGTATGTTTGGGGAGCGTTTATGCAAACGTGGTTTGA
GTTATCTAAGCACGGCTAGAACCTCGCAAACCCCACGGGGAAGATTGGAAGAATGTTTTATCAGATAAATGATTTTTGGTGTTTGTTGTATATATGGTTAGAGTAAGTGT
AATATAACACTCTTTATTACAATAACATGTACCATAAACACCGATTCTTATAACTTTTGCATCTTAAATACTGATTATTATAATTTTTGTACTATAAATATTGTTTATAA
TGTTAATACAATTTGCACTTCAAACACAATTTTTCCACAACTTCTAGTATAATAATACGGGGTTAAAATACACTTTATCATAATTTACTTATAATAACTCTATTGTGTTT
CAATCACATCCTAAACTTTAGAGAATATTTACAAATGTCACAAGTCCTAAACTCCATCCATAGCAATCATTGGGTAGGAAGGCCACTTCAAAAAAAACAAACAAATTGGG
AACAGCCTCTTAGATTTCCTCCTACCTTTTCCACTTTAGCCAAGGAGAATTACAAGTGCATCCAAGAAAAAAAAGGGTTGTAATGTGTTGTAGTAGAATCTTGTGCCTTT
TATGGTTGTGCAATGATGAATGATTTATGAGTAGCTTTTATGGAGGTTGTGCTGAAAAAACCCTAAACCAAAATGTGATAATGATGATGAGAGAGAATGTTGAATTGGTT
AGTGTGAAATGATATCAATTATCTGACTATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTA
ACTTTATGTTCTTTTGGTGCTATTCTTATTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGAA
GAAGAAGAAAGGAAGCGTGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGTAGAAGAAGAGCCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATT
TGGGGGCTTTCGTTCATCCAAGAAGTGACCATTACAGATTCATCTTCTTCAACTTGAGGTTTGAGCTCTGCCCTTGTGATCCTTGTGGAGTTATTTATTATGAACTGATG
CACGAGGGGTCTAAACGTGGGCTTCCCGGCCTCTAATAAGACTGTTTGTTGTATGGATTGAATATTTCAGTATGACCAACGAAGAATTGGTCAAGCTTAGCATGTCACGA
CCTTACTCGAACAAGATTTTTTCTGAATTTGTATAATTGTATTCTTAAGTTCTTTAGGGGGGTTTATCATGTTTTTTTATGTCATATATTTAATTCATATGCTATACCAT
GTTTTTTCATGTCTGTGTTCGGATCGGATCATCTTACACATGCATCGACAATTCTCACAAAACAATTGGATGAAATTGGATAATCCTATTATATGGGACACCCCAAAAGA
GACTTTGTGGCTAAATTTTGTTTAATCTTTGTTTTGGAAGTGGTGGTTGGAATGAAACAATAGGATCTTCAACACCAAGCATCTTTTTGCATCATGATCTCATGGGATCC
ACCATTCAGACAAACAGAGTTGTATTTGAGTCATCATCTCCCCTTTTTTGTATTTATCACTTATCTTTTCTTTTCTCTCATTGGCATCATCTTCTATAAGATAATATGAT
CTTTTGTACTATTTTCACAAATCAATGAAGAAAATTATATGGTTGTCAAGAAAATTCGCA
Protein sequenceShow/hide protein sequence
MAHMAMRHCCVRAAERSHFNPQTNCKSNFMFFWCYSYFPWLSQPFAGSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK