; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0023971 (gene) of Chayote v1 genome

Gene IDSed0023971
OrganismSechium edule (Chayote v1)
Descriptionnuclear transport factor 2
Genome locationLG01:10654070..10655554
RNA-Seq ExpressionSed0023971
SyntenySed0023971
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584071.1 Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]8.7e-5283.74Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSMLTFEGQQILG DDIS + QQLPFERCRHVVSTVD QPS  P S+LIFVSGSLELPDEEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNY
        MFHLVP+ QGNL VQN++FRLNY
Subjt:  MFHLVPSLQGNLFVQNEMFRLNY

XP_004153658.1 nuclear transport factor 2B [Cucumis sativus]6.7e-5281.45Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E++ DI+GKAFVEHYYQLFDNERAS+SSLYQPDSMLTFEGQQILG  DIS K QQLPFERCRHVVST+D QPS    S+LIFVSGS+E+P+EEHPLRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNYG
        MFHLVPS +GNLFVQN++FRLNYG
Subjt:  MFHLVPSLQGNLFVQNEMFRLNYG

XP_008441397.1 PREDICTED: nuclear transport factor 2 [Cucumis melo]4.2e-5482.54Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSMLTFEGQQILG +DIS K QQLPFERCRHVVST+D QPS  P S+LIFVSGS+E+P+EEHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPSLQGNLFVQNEMFRLNYG
        SQMFHLVPS QGNLFVQN++FRLNYG
Subjt:  SQMFHLVPSLQGNLFVQNEMFRLNYG

XP_022933198.1 nuclear transport factor 2B [Cucurbita moschata]1.3e-5283.87Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSMLTFEGQQILG DDIS + QQLPFERCRHVVSTVD QPS  P S+LIFVSGSLELPDEEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNYG
        MFHLVP+ QGNL VQN++FRLNYG
Subjt:  MFHLVPSLQGNLFVQNEMFRLNYG

XP_038895004.1 nuclear transport factor 2B [Benincasa hispida]8.7e-5283.87Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E++ADI+GKAFVEHYYQLFDNERAS+SSLYQPDSMLTFEGQQILG DDIS K QQLPFER RH+VST+D QPS    S LIFVSGSLELP+EEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNYG
        MFHLVPS QGNLFVQNE+FRLNYG
Subjt:  MFHLVPSLQGNLFVQNEMFRLNYG

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein3.2e-5281.45Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E++ DI+GKAFVEHYYQLFDNERAS+SSLYQPDSMLTFEGQQILG  DIS K QQLPFERCRHVVST+D QPS    S+LIFVSGS+E+P+EEHPLRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNYG
        MFHLVPS +GNLFVQN++FRLNYG
Subjt:  MFHLVPSLQGNLFVQNEMFRLNYG

A0A1S3B3B7 nuclear transport factor 22.0e-5482.54Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSMLTFEGQQILG +DIS K QQLPFERCRHVVST+D QPS  P S+LIFVSGS+E+P+EEHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPSLQGNLFVQNEMFRLNYG
        SQMFHLVPS QGNLFVQN++FRLNYG
Subjt:  SQMFHLVPSLQGNLFVQNEMFRLNYG

A0A6J1CEC9 nuclear transport factor 23.0e-5079.84Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E+++++VG+AFVEHYYQLFDNERASVSSLYQP+SMLTFEGQ+ILG DDIS + QQLPFERCRHVVST+D QPS    SLLIFVSGSLELP EEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNYG
        MFHLVP+ QG+LFVQN++FRLNYG
Subjt:  MFHLVPSLQGNLFVQNEMFRLNYG

A0A6J1F427 nuclear transport factor 2B6.5e-5383.87Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSMLTFEGQQILG DDIS + QQLPFERCRHVVSTVD QPS  P S+LIFVSGSLELPDEEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNYG
        MFHLVP+ QGNL VQN++FRLNYG
Subjt:  MFHLVPSLQGNLFVQNEMFRLNYG

A0A6J1KQ62 nuclear transport factor 2B1.6e-5181.45Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSMLTFEGQQILG  DIS + QQLPFERCRHVVSTVD QPS  P S+LIFVSGSLELP+EEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPSLQGNLFVQNEMFRLNYG
        MFHLVP+ QGNL +QN++FRLNYG
Subjt:  MFHLVPSLQGNLFVQNEMFRLNYG

SwissProt top hitse value%identityAlignment
Q10100 Nuclear transport factor 29.4e-2548.25Show/hide
Query:  FVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHLVPSLQG
        F + YYQ FD++R+ +SSLY+ +SML+FEG Q+ G   I  K   LPF+R +H +ST+D QP+ T  S+++ V+G L L +E+   R+SQ+FHLV +  G
Subjt:  FVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHLVPSLQG

Query:  NLFVQNEMFRLNYG
        N +V N++FRLNYG
Subjt:  NLFVQNEMFRLNYG

Q6FRC6 Nuclear transport factor 22.6e-2241.88Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHLVP
        + + F E YY  FD++R+ + +LY+ +SMLTFE  Q+ GA  I  K   LPF++  H ++T+D QP+     +L+ ++G L + DE++P RFSQ+FHL+P
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHLVP

Query:  SLQGNLFVQNEMFRLNY
            + +V N++FRLNY
Subjt:  SLQGNLFVQNEMFRLNY

Q9C7F5 Nuclear transport factor 2B1.3e-3455.2Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SMLTFEGQ+I G   I  K   LPF++C+H +STVD QPS   + +L+FVSG+L+L  EEH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPSLQGNLFVQNEMFRLNY
        SQMFHL+P+ QG+ +V N++FRLNY
Subjt:  SQMFHLVPSLQGNLFVQNEMFRLNY

Q9FZK4 Nuclear transport factor 2A4.7e-3257.14Show/hide
Query:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHL
        D V KAFVEHYY  FD  R  + SLYQ  SMLTFEGQ+I G+ +I  K   LPF++C+H ++TVD QPS     +L+FVSG+L+L  E+H L+FSQMFHL
Subjt:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHL

Query:  VPSLQGNLFVQNEMFRLNY
        + S QGN +V N++FRLNY
Subjt:  VPSLQGNLFVQNEMFRLNY

Q9XJ54 Nuclear transport factor 21.7e-3460.33Show/hide
Query:  ADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFH
        AD V KAFVEHYY+ FD  R ++ SLYQ  SMLTFEGQQ LGA  I+ K   LPF +C H ++TVD QPS     +L+FVSGSL    +EHPL+FSQMF 
Subjt:  ADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFH

Query:  LVPSLQGNLFVQNEMFRLNYG
        L+P+  GN +VQN+MFRLNYG
Subjt:  LVPSLQGNLFVQNEMFRLNYG

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like6.5e-2959.41Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTP---TSLLIFVSGSLELPDEEHPLRFSQMFH
        V  AFV HYY LFDN+R+S+SSLY P S+LTFEGQ I G D+IS K +QLPF++C H++STVD QPS        +L+FVSGS++L  E+HPLRFSQ++ 
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTP---TSLLIFVSGSLELPDEEHPLRFSQMFH

Query:  L
        L
Subjt:  L

AT1G11570.2 NTF2-like7.4e-4164.46Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTP---TSLLIFVSGSLELPDEEHPLRFSQMFH
        V  AFV HYY LFDN+R+S+SSLY P S+LTFEGQ I G D+IS K +QLPF++C H++STVD QPS        +L+FVSGS++L  E+HPLRFSQ FH
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTP---TSLLIFVSGSLELPDEEHPLRFSQMFH

Query:  LVPSLQGNLFVQNEMFRLNYG
        L+P LQG+ FVQNEMFRLNYG
Subjt:  LVPSLQGNLFVQNEMFRLNYG

AT1G27310.1 nuclear transport factor 2A3.3e-3357.14Show/hide
Query:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHL
        D V KAFVEHYY  FD  R  + SLYQ  SMLTFEGQ+I G+ +I  K   LPF++C+H ++TVD QPS     +L+FVSG+L+L  E+H L+FSQMFHL
Subjt:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHL

Query:  VPSLQGNLFVQNEMFRLNY
        + S QGN +V N++FRLNY
Subjt:  VPSLQGNLFVQNEMFRLNY

AT1G27970.1 nuclear transport factor 2B9.3e-3655.2Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SMLTFEGQ+I G   I  K   LPF++C+H +STVD QPS   + +L+FVSG+L+L  EEH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPSLQGNLFVQNEMFRLNY
        SQMFHL+P+ QG+ +V N++FRLNY
Subjt:  SQMFHLVPSLQGNLFVQNEMFRLNY

AT1G27970.2 nuclear transport factor 2B3.3e-3353.72Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SMLTFEGQ+I G   I  K   LPF++C+H +STVD QPS   + +L+FVSG+L+L  EEH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPSLQGNLFVQNEMF
        SQMFHL+P+ QG+ +V N++F
Subjt:  SQMFHLVPSLQGNLFVQNEMF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGATCAGGCTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCTGACTCCAT
GCTCACTTTCGAAGGCCAGCAAATCTTAGGCGCTGACGACATCTCTATAAAGTTTCAGCAATTGCCCTTTGAACGTTGCCGACATGTCGTCAGCACCGTCGACGTGCAGC
CCTCCGTCACCCCCACCTCCCTCCTCATCTTCGTCAGCGGTAGCCTTGAGCTACCCGATGAAGAACATCCCTTGAGATTCAGTCAGATGTTTCATTTGGTGCCCTCGTTA
CAGGGAAACCTTTTCGTTCAGAATGAGATGTTTCGCTTGAATTATGGTTAG
mRNA sequenceShow/hide mRNA sequence
CCTTTATTCCTCTCTTTGCGTACAGATACAGCAGTTTGATTCCCTATTTCATGAGTGTAATTAAAAAGCTTTGCTAAAGTTGCAAGGGGGCTACGTTCGTTCATTTCCAT
TATTAATCACCAAAATTACAGAGGTTGCAAGTAGGAGAAATAAAGCATGGAAGAAGATCAGGCTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCG
ACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCTGACTCCATGCTCACTTTCGAAGGCCAGCAAATCTTAGGCGCTGACGACATCTCTATAAAGTTTCAGCAATTG
CCCTTTGAACGTTGCCGACATGTCGTCAGCACCGTCGACGTGCAGCCCTCCGTCACCCCCACCTCCCTCCTCATCTTCGTCAGCGGTAGCCTTGAGCTACCCGATGAAGA
ACATCCCTTGAGATTCAGTCAGATGTTTCATTTGGTGCCCTCGTTACAGGGAAACCTTTTCGTTCAGAATGAGATGTTTCGCTTGAATTATGGTTAGTTCAAGGAGTGTT
CGGGCCTTAATTTGGAGATGAAAACGGCGTGGTTTGATGGGATATGATTTGTATTCATTTAATACAACATTAGAAGATGATAAATTAAATAATAGTTGAGCTTGCTCGGC
GTGATTTCTAGTTCTAGATCTTTATGTGAAGTTACAAATTTCTTGTTTTGTTACTCTGTTACATGTCTTTTGTGTGAAGCCCAAGAATTGATAGCATATTGGTTTCACTA
TTTAATGGTAATTCAATTCAAAACATAACCATAGAGGTTCGATCCTCGAAAAAATATTTTACTCTCAAATCTCTCGTTTGTTTTTGGGTTTGGAATGTTGGTGGCCCAAT
TACTGAGCTAGATTATGGACCTGCCTGGCCCATTGCCTCGCCTCAAACAGGCTCATGCTGGA
Protein sequenceShow/hide protein sequence
MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDISIKFQQLPFERCRHVVSTVDVQPSVTPTSLLIFVSGSLELPDEEHPLRFSQMFHLVPSL
QGNLFVQNEMFRLNYG