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Sed0024085 (gene) of Chayote v1 genome

Gene IDSed0024085
OrganismSechium edule (Chayote v1)
DescriptionTransposable element protein
Genome locationLG05:11510528..11513518
RNA-Seq ExpressionSed0024085
SyntenySed0024085
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021832270.1 uncharacterized protein LOC110772166 [Prunus avium]1.6e-2063.95Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTY-PDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLAR
        + K +AKPRLIRWILLLQEFD+EI+DKKG ENVVADHLSRL V    +  +L ++ENFPDEQ+F   +I    +PWFVD+ NYLAR
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTY-PDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLAR

XP_038699648.1 uncharacterized protein LOC119996938, partial [Tripterygium wilfordii]7.0e-2155.79Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV
        + K+NAKPRL+RWILLLQEFD+EIKDKKG ENVVADHLSRL      +  + I+E+FPDEQ+F+   I  +  PW+ DIAN+L    M   W  +
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV

XP_038714979.1 uncharacterized protein LOC120008660 [Tripterygium wilfordii]7.0e-2155.79Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV
        + K+NAKPRL+RWILLLQEFD+EIKDKKG ENVVADHLSRL      +  + I+E+FPDEQ+F+   I  +  PW+ DIAN+L    M   W  +
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV

XP_038715980.1 uncharacterized protein LOC120009442 [Tripterygium wilfordii]7.0e-2155.79Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV
        + K+NAKPRL+RWILLLQEFD+EIKDKKG ENVVADHLSRL      +  + I+E+FPDEQ+F+   I  +  PW+ DIAN+L    M   W  +
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV

XP_039121508.1 uncharacterized protein LOC120258213 [Dioscorea cayenensis subsp. rotundata]9.1e-2153.64Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTT--MLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMVHHP
        + K +AKPRLIRW+LLLQEFD+EIKDK+G EN+ ADHLSRL VT  ++T   + I++ FPDEQ+F ++V++E   PWF D ANYLA  A  RP  +    
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTT--MLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMVHHP

Query:  THQEKHPIVS
        T+Q+K    S
Subjt:  THQEKHPIVS

TrEMBL top hitse value%identityAlignment
A0A4Y1R644 Transposable element protein1.3e-2061.9Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA
        + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDEQ++V +V E    PW+ D  NYLA
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA

A0A5E4G4K7 PREDICTED: LOW QUALITY PROTEIN (Fragment)1.3e-2061.9Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA
        + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDEQ++V +V E    PW+ D  NYLA
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA

A0A5H2XRK6 Transposable element protein1.3e-2061.9Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA
        + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDEQ++V +V E    PW+ D  NYLA
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA

A0A5H2XVG6 Transposable element protein1.3e-2061.9Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA
        + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDEQ++V +V E    PW+ D  NYLA
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLA

A0A6P5TZ80 uncharacterized protein LOC1107721667.5e-2163.95Show/hide
Query:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTY-PDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLAR
        + K +AKPRLIRWILLLQEFD+EI+DKKG ENVVADHLSRL V    +  +L ++ENFPDEQ+F   +I    +PWFVD+ NYLAR
Subjt:  MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTY-PDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAATCTAACGCAAAACCAAGGCTGATTAGATGGATACTTCTTCTGCAAGAGTTTGACATAGAAATCAAGGACAAGAAGGGATGTGAGAATGTTGTGGCAGATCA
CCTATCACGACTCAAGGTCACATATCCTGACACAACTATGCTCCGCATATCAGAAAACTTCCCTGATGAGCAAGTTTTTGTGTTGAAAGTAATAGAAGAAAGGAATGCCC
CTTGGTTCGTGGACATTGCCAATTATTTAGCAAGAAAAGCCATGATGCGACCATGGAGGATGGTGCATCATCCAACACACCAAGAAAAGCATCCAATAGTGTCAATTAGA
GCCATTAAGAAGCAAGCCACATTGATGTCGATAGTGTCAGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAATGAGCTACCACATGGCACATGA
GTGTGTCATGGTGTGGGCGAGCGCTTGCAAGACGAGTGTCTTGGGCATCTTCCTTCGGGACTGGAAATCTGGGGACAGTGTCGGACGACACAGGTGTGCCAACATTGCAC
CCTTGCCCATGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAATCTAACGCAAAACCAAGGCTGATTAGATGGATACTTCTTCTGCAAGAGTTTGACATAGAAATCAAGGACAAGAAGGGATGTGAGAATGTTGTGGCAGATCA
CCTATCACGACTCAAGGTCACATATCCTGACACAACTATGCTCCGCATATCAGAAAACTTCCCTGATGAGCAAGTTTTTGTGTTGAAAGTAATAGAAGAAAGGAATGCCC
CTTGGTTCGTGGACATTGCCAATTATTTAGCAAGAAAAGCCATGATGCGACCATGGAGGATGGTGCATCATCCAACACACCAAGAAAAGCATCCAATAGTGTCAATTAGA
GCCATTAAGAAGCAAGCCACATTGATGTCGATAGTGTCAGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAATGAGCTACCACATGGCACATGA
GTGTGTCATGGTGTGGGCGAGCGCTTGCAAGACGAGTGTCTTGGGCATCTTCCTTCGGGACTGGAAATCTGGGGACAGTGTCGGACGACACAGGTGTGCCAACATTGCAC
CCTTGCCCATGGGATAG
Protein sequenceShow/hide protein sequence
MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMVHHPTHQEKHPIVSIR
AIKKQATLMSIVSGEAWCQLSTTPGPCGLMSYHMAHECVMVWASACKTSVLGIFLRDWKSGDSVGRHRCANIAPLPMG