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Sed0024086 (gene) of Chayote v1 genome

Gene IDSed0024086
OrganismSechium edule (Chayote v1)
Descriptionribonuclease III domain-containing protein RNC1, chloroplastic-like
Genome locationLG11:557214..558513
RNA-Seq ExpressionSed0024086
SyntenySed0024086
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036433.1 ribonuclease III domain-containing protein RNC1 [Cucumis melo var. makuwa]1.4e-0857.14Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS +PN SFSSSLTPF VK  P  PI   S           +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
KAG6604142.1 Ribonuclease III domain-containing protein RNC1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.8e-0858.97Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
XP_022949934.1 ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita moschata]1.8e-0858.97Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
XP_022977519.1 ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita maxima]1.1e-0858.97Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
XP_023543359.1 ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo]1.1e-0858.97Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
TrEMBL top hitse value%identityAlignment
A0A5A7T0M4 Ribonuclease III domain-containing protein RNC16.8e-0957.14Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS +PN SFSSSLTPF VK  P  PI   S           +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
A0A5D3CNU2 Ribonuclease III domain-containing protein RNC12.6e-0855.84Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS +PN SFSSSLTPF VK  P  PI               +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
A0A6J1BVK6 ribonuclease III domain-containing protein RNC1, chloroplastic2.0e-0854.55Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FVQL+S TPN SFSSSLTPFH K  P  P                +   ++LPKNN QRLLKE  E+KRATSPKK+V
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
A0A6J1GEC3 ribonuclease III domain-containing protein RNC1, chloroplastic-like8.8e-0958.97Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
A0A6J1IRK8 ribonuclease III domain-containing protein RNC1, chloroplastic-like5.2e-0958.97Show/hide
Query:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        FV+LSS TPN SFSSSLTPF VK  P  P +S  S   + +F  + +   ++LPKNN QRLLKE  E+KRATSPKKKV
Subjt:  FVQLSSSTPNLSFSSSLTPFHVKTTPTIP-ISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
SwissProt top hitse value%identityAlignment
Q9SZV0 Ribonuclease III domain-containing protein RNC1, chloroplastic2.6e-0543.84Show/hide
Query:  SSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        SSS P +SFSSS++ F  KT   +  S+  + +IC    S     + LP+++ QRLLKE  ++K AT PKKKV
Subjt:  SSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
Arabidopsis top hitse value%identityAlignment
AT4G37510.1 Ribonuclease III family protein1.8e-0643.84Show/hide
Query:  SSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV
        SSS P +SFSSS++ F  KT   +  S+  + +IC    S     + LP+++ QRLLKE  ++K AT PKKKV
Subjt:  SSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTAATTGCAATTTTACCTGTCAAAGCATCCAAACTTAATGGAACTTTCTTCTTTTTTGTTCAACTTTCATCCTCGACCCCCAATTTATCTTTCTCTTCTTCCTT
AACCCCATTTCATGTAAAAACTACACCAACAATCCCAATTTCTCAAACCTCACATCGGAAAATTTGTGTATTTTTGCAGTCGCAGTTGACCCACAACAAAAAATTGCCCA
AAAACAACCTTCAAAGACTACTCAAAGAGGCGGTGGAGCAAAAACGAGCCACATCTCCAAAGAAGAAGGTGTTTGATGAAATGACTGAAGGTCTTGGAGCTTGGAAGATA
GATTGGAAGATAGATTCAACTTTTACATTGGCTTTCTCTATATTTTTCTCTCAAGAAAGATCAAGAGACAAACATAAGTTGAAAGGTCTGCTACAATATCATAGATATTT
TGAATGCACCAAAGGAAGAAAACCAGAAATACATGAGAGGAACAGACCCGAGAGCTTGTTTTTAAAGCATAAGGGAGAAAACGGAAACCTGAAAAAAAATGGACAAGAAA
TACATGATTTTGGAGCTAAGCAGCAGACTTGA
mRNA sequenceShow/hide mRNA sequence
TTCGTTTCCATTTCAACTCCAGACCAATTCATCTCTTGCATCCACAAGCTCATCGTTGAAATCCACACATTAGAGGAAGTCTCCAATTTTCTCATGGTGGTAATTGCAAT
TTTACCTGTCAAAGCATCCAAACTTAATGGAACTTTCTTCTTTTTTGTTCAACTTTCATCCTCGACCCCCAATTTATCTTTCTCTTCTTCCTTAACCCCATTTCATGTAA
AAACTACACCAACAATCCCAATTTCTCAAACCTCACATCGGAAAATTTGTGTATTTTTGCAGTCGCAGTTGACCCACAACAAAAAATTGCCCAAAAACAACCTTCAAAGA
CTACTCAAAGAGGCGGTGGAGCAAAAACGAGCCACATCTCCAAAGAAGAAGGTGTTTGATGAAATGACTGAAGGTCTTGGAGCTTGGAAGATAGATTGGAAGATAGATTC
AACTTTTACATTGGCTTTCTCTATATTTTTCTCTCAAGAAAGATCAAGAGACAAACATAAGTTGAAAGGTCTGCTACAATATCATAGATATTTTGAATGCACCAAAGGAA
GAAAACCAGAAATACATGAGAGGAACAGACCCGAGAGCTTGTTTTTAAAGCATAAGGGAGAAAACGGAAACCTGAAAAAAAATGGACAAGAAATACATGATTTTGGAGCT
AAGCAGCAGACTTGACATTGAAACAAAAACACACAAGTAAGATCAGAGTGGAGTGAAGTTGATGTTCTTGAAGATTTGAGGATGAATTTTGATTTGTTAAAATCATGGGA
TTTTTGGGACTCTTATCTGGTTGTTTTAG
Protein sequenceShow/hide protein sequence
MVVIAILPVKASKLNGTFFFFVQLSSSTPNLSFSSSLTPFHVKTTPTIPISQTSHRKICVFLQSQLTHNKKLPKNNLQRLLKEAVEQKRATSPKKKVFDEMTEGLGAWKI
DWKIDSTFTLAFSIFFSQERSRDKHKLKGLLQYHRYFECTKGRKPEIHERNRPESLFLKHKGENGNLKKNGQEIHDFGAKQQT