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Sed0024121 (gene) of Chayote v1 genome

Gene IDSed0024121
OrganismSechium edule (Chayote v1)
DescriptionEukaryotic translation initiation factor 3 subunit A
Genome locationLG01:8232690..8233304
RNA-Seq ExpressionSed0024121
SyntenySed0024121
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OWF48336.1 Eukaryotic translation initiation factor 3 subunit A [Mizuhopecten yessoensis]9.4e-0531.31Show/hide
Query:  YLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYLHEQLVKR
        YL++  V  +YL++  V R++L++  V+R++L++  V+R+YLY+  ++R+YL++  V R +L+     + + ++  V   YL++  V R+YL++  V+R
Subjt:  YLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYLHEQLVKR

OWF52660.1 hypothetical protein KP79_PYT25511 [Mizuhopecten yessoensis]7.2e-0537.62Show/hide
Query:  HCL--YESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYL
        HC+     YLH      +YLH  P +R++LH  P +R+ LH  P +R+YL+  P K +YLH  P K  +LH    ++ +LH       YLH     R+YL
Subjt:  HCL--YESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYL

Query:  H
        H
Subjt:  H

SOV75390.1 conserved Plasmodium protein, unknown function [Plasmodium reichenowi]2.7e-0431.07Show/hide
Query:  ESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLHKQ----QHLHEQLVNESYLHEQLVNRLYLHEQLVK
        E Y +EQ  NE Y +EQ +   +++E+ +   +++EQ +   Y+ E+ I   Y++EQ +   ++++Q    Q+++EQ +NE Y++EQ +N  Y +E+ ++
Subjt:  ESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLHKQ----QHLHEQLVNESYLHEQLVNRLYLHEQLVK

Query:  RQS
         QS
Subjt:  RQS

XP_033934669.1 uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like [Pseudochaenichthys georgianus]4.6e-0428.42Show/hide
Query:  YESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLHKQ-QHLHEQLVNESYLHEQLVNRLYLHEQ
        ++ +LH++  ++ +LH++P  + HLH++P  + HLH++P  + +L+++P  + +LH++P  + HLH++ +H H++  ++ +LH++  ++ +LH++
Subjt:  YESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLHKQ-QHLHEQLVNESYLHEQLVNRLYLHEQ

TrEMBL top hitse value%identityAlignment
A0A210QI23 Eukaryotic translation initiation factor 3 subunit A4.5e-0531.31Show/hide
Query:  YLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYLHEQLVKR
        YL++  V  +YL++  V R++L++  V+R++L++  V+R+YLY+  ++R+YL++  V R +L+     + + ++  V   YL++  V R+YL++  V+R
Subjt:  YLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYLHEQLVKR

A0A210QVB3 Uncharacterized protein3.5e-0537.62Show/hide
Query:  HCL--YESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYL
        HC+     YLH      +YLH  P +R++LH  P +R+ LH  P +R+YL+  P K +YLH  P K  +LH    ++ +LH       YLH     R+YL
Subjt:  HCL--YESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLH----KQQHLHEQLVNESYLHEQLVNRLYL

Query:  H
        H
Subjt:  H

A0A2P9D4V9 Uncharacterized protein1.3e-0431.07Show/hide
Query:  ESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLHKQ----QHLHEQLVNESYLHEQLVNRLYLHEQLVK
        E Y +EQ  NE Y +EQ +   +++E+ +   +++EQ +   Y+ E+ I   Y++EQ +   ++++Q    Q+++EQ +NE Y++EQ +N  Y +E+ ++
Subjt:  ESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLHKQ----QHLHEQLVNESYLHEQLVNRLYLHEQLVK

Query:  RQS
         QS
Subjt:  RQS

C5M4Y8 Uncharacterized protein5.0e-0442.72Show/hide
Query:  HCLYESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQ------PVKRLYLYEQPIKRLYLHEQPVKRFHLHKQQHLHEQLVNESYLHEQLVNRLYL
        H L     H   V +   H  PVKR HLH+  VKR HLH Q      PVKR   ++ P+KR   H+ PVKRFHLH+ +  H+  V + +LH   V R +L
Subjt:  HCLYESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQ------PVKRLYLYEQPIKRLYLHEQPVKRFHLHKQQHLHEQLVNESYLHEQLVNRLYL

Query:  HEQ
        H Q
Subjt:  HEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGAAAAAAAAAACATTGTCTCTATGAGTCGTACTTGCATGAGCAGCTGGTCAATGAGTTGTACTTGCATGAGCAGCCGGTCAAGAGGTTGCACTTGCATGAGCA
GCCGGTCAAGAGGTTGCACTTACATGAGCAGCCAGTCAAGAGGTTGTACTTGTATGAGCAGCCGATCAAGAGGTTGTACTTACATGAGCAGCCGGTCAAGAGGTTTCACT
TGCATAAGCAGCAGCACTTGCATGAGCAGCTAGTCAATGAGTCGTACTTGCATGAGCAGCTGGTCAATAGGTTGTACTTGCATGAGCAGCTGGTCAAGAGGCAGTCAAAA
GGTCGTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGAAAAAAAAAACATTGTCTCTATGAGTCGTACTTGCATGAGCAGCTGGTCAATGAGTTGTACTTGCATGAGCAGCCGGTCAAGAGGTTGCACTTGCATGAGCA
GCCGGTCAAGAGGTTGCACTTACATGAGCAGCCAGTCAAGAGGTTGTACTTGTATGAGCAGCCGATCAAGAGGTTGTACTTACATGAGCAGCCGGTCAAGAGGTTTCACT
TGCATAAGCAGCAGCACTTGCATGAGCAGCTAGTCAATGAGTCGTACTTGCATGAGCAGCTGGTCAATAGGTTGTACTTGCATGAGCAGCTGGTCAAGAGGCAGTCAAAA
GGTCGTTTATAGCGCATCCCGCGACAAGGTCGTTCATAGTGCATCCTACGCCAAGGTCATTTATAGCGCATCCCGTTGCAAAGCGCACTTACATTTGTACTTGCATGAGC
AGCTGGTCAAGAGGCAGTCAAAAGGTCGTTTATGGCGCATCTCTTCGCAAGGTTGTTTATAGCGCATCCCGTCGCAAAGCGCACCCTGCGACAAGGTCGTTTATAGCGCA
TCCCGCGACAAGGTCGTTTATAGTGCATCCCGCGACAAGGTCGTTTATGGCGCATCTCGTCGCAA
Protein sequenceShow/hide protein sequence
MERKKKHCLYESYLHEQLVNELYLHEQPVKRLHLHEQPVKRLHLHEQPVKRLYLYEQPIKRLYLHEQPVKRFHLHKQQHLHEQLVNESYLHEQLVNRLYLHEQLVKRQSK
GRL