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Sed0024129 (gene) of Chayote v1 genome

Gene IDSed0024129
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 22-like
Genome locationLG13:5962501..5964602
RNA-Seq ExpressionSed0024129
SyntenySed0024129
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577157.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1774.65Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVS  SFGF+ AAAL+FA+ LPVA+P SL   PAPT DGT IDQGIAY+LMLVALALTYLIH+ADLS++F
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

XP_022136454.1 arabinogalactan peptide 22-like [Momordica charantia]5.3e-1976.06Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSLP--PAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVS +SFGF+ AAAL+FA+ LPVA PHSLP  PAP+ DGT IDQGIAY+LMLVALALTYLIH+ADLS++F
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSLP--PAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

XP_022931316.1 arabinogalactan peptide 22-like [Cucurbita moschata]1.0e-1774.65Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVS +SFGF+ AAAL+FA+ LPVA+P SL   PAPT DGT IDQGIAY+LMLVALALTYLIH+ADLS++F
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

XP_022985432.1 arabinogalactan peptide 20 [Cucurbita maxima]1.7e-1774.65Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVS +SFGF+ AAAL+FA+ LPVA+P SL   PAPT DGT IDQGIAY+LMLVALALTYLIH+ADLS +F
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

XP_038882280.1 arabinogalactan protein 22-like [Benincasa hispida]1.1e-1977.46Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVST+SFGF+ AAAL+FA+ LPVA+PHSL   PAPT DGT IDQGIAY+LM+VALALTYLIH+ADLS+TF
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

TrEMBL top hitse value%identityAlignment
A0A0A0KZS8 Uncharacterized protein1.6e-1674.63Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADL
        MAVS SSFG + A AL+FA+ LPVA PHSL   PAPT DGT IDQGIAY+LM+VALALTYLIH+ADL
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADL

A0A6J1C4C2 arabinogalactan peptide 22-like2.6e-1976.06Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSLP--PAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVS +SFGF+ AAAL+FA+ LPVA PHSLP  PAP+ DGT IDQGIAY+LMLVALALTYLIH+ADLS++F
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSLP--PAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

A0A6J1ETC6 arabinogalactan peptide 22-like4.9e-1874.65Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVS +SFGF+ AAAL+FA+ LPVA+P SL   PAPT DGT IDQGIAY+LMLVALALTYLIH+ADLS++F
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

A0A6J1FMT5 arabinogalactan peptide 22-like3.0e-1574.63Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADL
        MAVS +SFGF+ AAALVF + LPVA+P SL   PAPT DGT IDQGIAY+LM VALALTYLIH ADL
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADL

A0A6J1J4V7 arabinogalactan peptide 208.3e-1874.65Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MAVS +SFGF+ AAAL+FA+ LPVA+P SL   PAPT DGT IDQGIAY+LMLVALALTYLIH+ADLS +F
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 168.0e-1056.34Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MA   S  GF    + VFAV+L +A   SL   PAPT DGT IDQGIAY+LM+VAL LTYLIH  D S ++
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

Q8L9T8 Arabinogalactan protein 414.2e-1160.32Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH
        M+ S   FG  T  +++FA+LLP+A   S    PAPT DGT IDQGIAY+LMLVAL LTYLIH
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH

Q9FK16 Arabinogalactan protein 222.3e-0964.58Show/hide
Query:  LVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH
        ++  +LLP+A+ HS    PAPT DGT IDQGIAY+LM+VALALTY IH
Subjt:  LVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH

Q9M373 Arabinogalactan protein 203.6e-1058.46Show/hide
Query:  STSSFGFMTAAALVFAVLLPVARPHSLPPA--PTGDGTFIDQGIAYMLMLVALALTYLIHDADLS
        S +S   +   A VFAV+ P A   SL PA  PT DGT IDQGIAY+LM+VAL LTYLIH  D S
Subjt:  STSSFGFMTAAALVFAVLLPVARPHSLPPA--PTGDGTFIDQGIAYMLMLVALALTYLIHDADLS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 165.7e-1156.34Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF
        MA   S  GF    + VFAV+L +A   SL   PAPT DGT IDQGIAY+LM+VAL LTYLIH  D S ++
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF

AT3G61640.1 arabinogalactan protein 202.6e-1158.46Show/hide
Query:  STSSFGFMTAAALVFAVLLPVARPHSLPPA--PTGDGTFIDQGIAYMLMLVALALTYLIHDADLS
        S +S   +   A VFAV+ P A   SL PA  PT DGT IDQGIAY+LM+VAL LTYLIH  D S
Subjt:  STSSFGFMTAAALVFAVLLPVARPHSLPPA--PTGDGTFIDQGIAYMLMLVALALTYLIHDADLS

AT5G24105.1 arabinogalactan protein 413.0e-1260.32Show/hide
Query:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH
        M+ S   FG  T  +++FA+LLP+A   S    PAPT DGT IDQGIAY+LMLVAL LTYLIH
Subjt:  MAVSTSSFGFMTAAALVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH

AT5G53250.1 arabinogalactan protein 221.7e-1064.58Show/hide
Query:  LVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH
        ++  +LLP+A+ HS    PAPT DGT IDQGIAY+LM+VALALTY IH
Subjt:  LVFAVLLPVARPHSL--PPAPTGDGTFIDQGIAYMLMLVALALTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTTTCTACATCTTCTTTCGGATTTATGACCGCCGCCGCGCTCGTCTTCGCCGTCCTCTTGCCGGTTGCTCGGCCTCACTCTTTGCCTCCGGCTCCCACCGGCGA
CGGGACATTCATAGACCAAGGGATAGCTTATATGTTAATGTTGGTGGCATTGGCACTCACATATCTCATCCATGATGCTGACTTATCCCACACCTTCTAA
mRNA sequenceShow/hide mRNA sequence
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGAAGGCTCGATTCTTGGCCTGAAGAAACGAATCGGAGAAATTAGAGCTCGATCTGGAATCTAATGGCCGTT
TCTACATCTTCTTTCGGATTTATGACCGCCGCCGCGCTCGTCTTCGCCGTCCTCTTGCCGGTTGCTCGGCCTCACTCTTTGCCTCCGGCTCCCACCGGCGACGGGACATT
CATAGACCAAGGGATAGCTTATATGTTAATGTTGGTGGCATTGGCACTCACATATCTCATCCATGATGCTGACTTATCCCACACCTTCTAAGAGAATCTTTTGATCAAAG
GAGAAGGGAATTAATTTTAGTTAGAAATGCAAATGGGTTTTGAGGGAATTGGATTCTTTTGCATGTTGTAGTTTCTGTGTTTGGTATTATTATTATTAGTGCTGATCTTC
CATTGCTCTGTACAGTGTCCTGATTTTGAATCCTTTCTTTTCTCTCTCTCTCTCTCTTCAATTTTATAGGTAAAGGAGAGGGAAAGAGTTGAAAACAACCCACAATTATT
AAATTATGGAAGGAAACATAGCTTACATGGTTGGTTAATGCATTTCTATTCTACCATTTCTATAATATTGTATTCTAAAAAGGATAACCTTCAAAATCAGATGTAAATTT
TTTTTGTGAAAAAAAGT
Protein sequenceShow/hide protein sequence
MAVSTSSFGFMTAAALVFAVLLPVARPHSLPPAPTGDGTFIDQGIAYMLMLVALALTYLIHDADLSHTF