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Sed0024175 (gene) of Chayote v1 genome

Gene IDSed0024175
OrganismSechium edule (Chayote v1)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationLG10:29374032..29375372
RNA-Seq ExpressionSed0024175
SyntenySed0024175
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152691.1 uncharacterized protein LOC101215562 [Cucumis sativus]7.7e-5276.19Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPA-TDTAEEAVFEESDVERKNLEKLKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLE+EHLRAVS+ VD   D +T+G D+KRS S PPA  D A EA F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPA-TDTAEEAVFEESDVERKNLEKLKK

Query:  SCWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGA
          WWTRSN AFLNEPPVLDGA+KA    YGVADVAS KLNHS+GVGA
Subjt:  SCWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGA

XP_008444729.1 PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo]1.3e-5173.15Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRA+S+ VDR  D + +G D+KRS S PPA D A E+ F E+ ++RKNLE+L+K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGAWLH
         WWTRSN AFLNEPPVLDGA+KA    YGVADVAS KLNH++GVGA LH
Subjt:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGAWLH

XP_022144322.1 uncharacterized protein LOC111014033 [Momordica charantia]7.7e-5276.76Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRA+SM VD  VD D +G D+KRS S PPA  TAEE     SD ERKNLEKLK +
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKAYGVADVASYKLNHSDGVGA
         WWTRSN AFLNEPPVLDGAAKAY     AS+KLNHS+G+GA
Subjt:  CWWTRSNWAFLNEPPVLDGAAKAYGVADVASYKLNHSDGVGA

XP_023002545.1 uncharacterized protein LOC111496358 [Cucurbita maxima]1.8e-4877.94Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRA+SM VDR    DT+G D+KRS S P A   AE+ VF ESD+ERKNLEKLKK+
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASY
         WW RSN AFLNEPPVLDGAAKA    YGV DVAS+
Subjt:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASY

XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]3.1e-5374.66Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLM GWNSPVLDPKSVKFKRNRSLTK+EIEAYW+SK+K EEEHLRA+SM VDR +D +T+G D+KRS S PPA D + EA F E+D+ER+NLEKLKK 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGA
         WWTRSN AFLNEPPVLDGA K     YGVADVAS KLNHS+GVG+
Subjt:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGA

TrEMBL top hitse value%identityAlignment
A0A0A0LRI3 Uncharacterized protein3.7e-5276.19Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPA-TDTAEEAVFEESDVERKNLEKLKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLE+EHLRAVS+ VD   D +T+G D+KRS S PPA  D A EA F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPA-TDTAEEAVFEESDVERKNLEKLKK

Query:  SCWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGA
          WWTRSN AFLNEPPVLDGA+KA    YGVADVAS KLNHS+GVGA
Subjt:  SCWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGA

A0A1S3BBS7 uncharacterized protein LOC1034879796.3e-5273.15Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRA+S+ VDR  D + +G D+KRS S PPA D A E+ F E+ ++RKNLE+L+K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGAWLH
         WWTRSN AFLNEPPVLDGA+KA    YGVADVAS KLNH++GVGA LH
Subjt:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGAWLH

A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A6.3e-5273.15Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRA+S+ VDR  D + +G D+KRS S PPA D A E+ F E+ ++RKNLE+L+K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGAWLH
         WWTRSN AFLNEPPVLDGA+KA    YGVADVAS KLNH++GVGA LH
Subjt:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASYKLNHSDGVGAWLH

A0A6J1CTD0 uncharacterized protein LOC1110140333.7e-5276.76Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRA+SM VD  VD D +G D+KRS S PPA  TAEE     SD ERKNLEKLK +
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKAYGVADVASYKLNHSDGVGA
         WWTRSN AFLNEPPVLDGAAKAY     AS+KLNHS+G+GA
Subjt:  CWWTRSNWAFLNEPPVLDGAAKAYGVADVASYKLNHSDGVGA

A0A6J1KP90 uncharacterized protein LOC1114963588.6e-4977.94Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRA+SM VDR    DT+G D+KRS S P A   AE+ VF ESD+ERKNLEKLKK+
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKS

Query:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASY
         WW RSN AFLNEPPVLDGAAKA    YGV DVAS+
Subjt:  CWWTRSNWAFLNEPPVLDGAAKA----YGVADVASY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein6.1e-1536.5Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKK
        MGSLM GW+S V DPKSV  +R +SLT+EEI+ +W++K+K  EEEH++A S  V +                     + A+    E+  V+     + K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKK

Query:  SCWWTRSNWAFLNEPPVLDGAAKAYGVADVASYKLNH
        S WW ++ WAFLNEP   +G    Y    V+ +K+ H
Subjt:  SCWWTRSNWAFLNEPPVLDGAAKAYGVADVASYKLNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTAATGGGCGGCTGGAACTCTCCCGTTCTCGATCCTAAATCAGTCAAGTTCAAGAGAAATCGGTCGCTTACGAAAGAGGAAATCGAAGCTTACTGGAGATC
GAAGAGGAAGTTGGAGGAAGAACATCTCAGAGCAGTTTCTATGTCGGTGGATCGTTGCGTTGATAGCGATACGATCGGAAAAGACTTCAAGAGATCGATTTCGCCTCCGC
CGGCCACCGATACGGCCGAGGAAGCAGTGTTTGAAGAGAGCGATGTGGAGAGGAAAAACCTAGAAAAGTTGAAGAAAAGTTGCTGGTGGACGAGGAGTAATTGGGCGTTT
CTGAATGAACCGCCGGTGCTCGACGGCGCTGCCAAAGCTTACGGCGTCGCCGACGTGGCCTCCTACAAGTTGAATCACAGCGATGGAGTCGGTGCTTGGTTACACTGA
mRNA sequenceShow/hide mRNA sequence
GCCTTGGTTTAGAGTTTGAGTAGCTGGAAATGGGTTCTCTAATGGGCGGCTGGAACTCTCCCGTTCTCGATCCTAAATCAGTCAAGTTCAAGAGAAATCGGTCGCTTACG
AAAGAGGAAATCGAAGCTTACTGGAGATCGAAGAGGAAGTTGGAGGAAGAACATCTCAGAGCAGTTTCTATGTCGGTGGATCGTTGCGTTGATAGCGATACGATCGGAAA
AGACTTCAAGAGATCGATTTCGCCTCCGCCGGCCACCGATACGGCCGAGGAAGCAGTGTTTGAAGAGAGCGATGTGGAGAGGAAAAACCTAGAAAAGTTGAAGAAAAGTT
GCTGGTGGACGAGGAGTAATTGGGCGTTTCTGAATGAACCGCCGGTGCTCGACGGCGCTGCCAAAGCTTACGGCGTCGCCGACGTGGCCTCCTACAAGTTGAATCACAGC
GATGGAGTCGGTGCTTGGTTACACTGAAAATAAAAACAAAGTTAAAACGATACTAATTAATAATTAGTAAGCTATATGTGAAATCATGTATTAATTATATAAATATGTTG
TATAATTATTGTATGGTTTCTGTGTATGTTTGATTTGTATTCTCGAATTTGAAGCTCTGAATTATGGTCAGATTCCAAGACGGCGTAGCTCTTTTATATTTAATCA
Protein sequenceShow/hide protein sequence
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMSVDRCVDSDTIGKDFKRSISPPPATDTAEEAVFEESDVERKNLEKLKKSCWWTRSNWAF
LNEPPVLDGAAKAYGVADVASYKLNHSDGVGAWLH