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Sed0024195 (gene) of Chayote v1 genome

Gene IDSed0024195
OrganismSechium edule (Chayote v1)
Descriptiontrafficking protein particle complex subunit 2-like protein
Genome locationLG05:35097447..35101405
RNA-Seq ExpressionSed0024195
SyntenySed0024195
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR007233 - Trafficking protein particle complex subunit
IPR011012 - Longin-like domain superfamily
IPR044760 - Trafficking protein particle complex subunit 2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589019.1 Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia]1.4e-7499.3Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_004144858.1 trafficking protein particle complex subunit 2-like protein [Cucumis sativus]5.4e-7498.6Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_022136317.1 trafficking protein particle complex subunit 2-like protein [Momordica charantia]7.8e-7395.8Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSA+
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_022928280.1 trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]1.4e-7499.3Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_031127945.1 trafficking protein particle complex subunit 2-like protein [Ipomoea triloba]2.3e-7296.48Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRNFFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSA
        RFHAAYVDAVSNPFHVPGKKITS+TF ESVSTIVKSFG SSA
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSA

TrEMBL top hitse value%identityAlignment
A0A0A0K4Q0 Uncharacterized protein2.6e-7498.6Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A1S3BJH9 trafficking protein particle complex subunit 2-like protein2.6e-7498.6Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A6J1C584 trafficking protein particle complex subunit 2-like protein3.8e-7395.8Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSA+
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A6J1ERA2 Trafficking protein particle complex subunit6.9e-7599.3Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A6J1JPT4 Trafficking protein particle complex subunit6.9e-7599.3Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFHAAYVDAVSNPFHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI

SwissProt top hitse value%identityAlignment
A6H7F7 Trafficking protein particle complex subunit 2-like protein2.6e-3147.79Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF
        M VCVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ 
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF

Query:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV
        FR+ H +Y D + NPF+ PG +I S+ F+  V++++
Subjt:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV

B2RYU6 Trafficking protein particle complex subunit 2-like protein6.9e-3247.79Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF
        M VC+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ 
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF

Query:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV
        FR+ H +Y D + NPF+ PG +I S+ F+  V++++
Subjt:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV

Q54CU7 Trafficking protein particle complex subunit 2-like protein7.4e-3448.92Show/hide
Query:  IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRN
        IVCVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + +K     ++ +LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ 
Subjt:  IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRN

Query:  FFRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKS
        FF+R    +++  SNPF+ P  K+ SK F + V+ +V S
Subjt:  FFRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKS

Q5M8X5 Trafficking protein particle complex subunit 2-like protein4.1e-3248.53Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF
        M VCVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ 
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF

Query:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV
        FR+ H +Y D + NPF+ PG  I S+ F+ +V++++
Subjt:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV

Q9JME7 Trafficking protein particle complex subunit 2-like protein9.0e-3247.79Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF
        M VC+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ 
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNF

Query:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV
        FR+ H +Y D + NPF+ PG +I S+ F+  V++++
Subjt:  FRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIV

Arabidopsis top hitse value%identityAlignment
AT2G20930.1 SNARE-like superfamily protein3.6e-6885.71Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR
        MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNP+KSG TLNE FLGLLYPT NYKVYGYLTNTKVKFI+VTTDLDVRD DVR+FFR
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFR

Query:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFS
        +FHAAYVDAVSNPFHVPGKKITS+TF ++VS IV S+G +
Subjt:  RFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAAGCGGACGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCGTT
GGATGTCGTCGATGAGCGAGTGAATAATCCGAGAAAATCTGGACCGACCTTGAACGAGACCTTTCTTGGTCTTCTTTATCCGACTGAGAATTACAAAGTGTATGGGTATT
TGACGAACACTAAAGTGAAGTTTATTATGGTGACCACAGATCTAGATGTTAGAGATGCTGATGTGAGAAATTTTTTCCGGAGATTTCATGCCGCATATGTGGATGCAGTT
TCAAACCCATTTCATGTGCCAGGTAAAAAAATTACTTCCAAAACTTTTGAAGAAAGTGTGAGCACCATCGTGAAGTCGTTTGGGTTCAGTTCAGCTATTTGA
mRNA sequenceShow/hide mRNA sequence
TTTGTCAAAAAATATAATTTGGACTAAACTTGTAATTTAATGGGGGATATAAGGGTCAAATGATCATTTCACAAGTAAGAAATTTCCTTTTTGTGTAGAAGAATCGACCT
TCGCCGTGGTATCGCAACCAGGCAAAAGTTTTGCCGCACTCTTCCGCCGGCCGGCCACCGTCGAAGATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCT
TTACATTCAAAGCTTCACGGAAGCGGACGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCGTTGGATGTCGTCGATGAGCGAGTGAATAATCCGAGAAAATCTGGAC
CGACCTTGAACGAGACCTTTCTTGGTCTTCTTTATCCGACTGAGAATTACAAAGTGTATGGGTATTTGACGAACACTAAAGTGAAGTTTATTATGGTGACCACAGATCTA
GATGTTAGAGATGCTGATGTGAGAAATTTTTTCCGGAGATTTCATGCCGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAAAAAATTACTTCCAAAAC
TTTTGAAGAAAGTGTGAGCACCATCGTGAAGTCGTTTGGGTTCAGTTCAGCTATTTGAGTAAACAACCACTGAAACTTGAATACCAAGTCTGAAGCCGTCGATATCTGTA
GTTCATTTACTGCTTTGTCTCCTAATCTTTCTTTTCTTTTTTTTGTTGATTTTCTTTGAAATATTTTTTCTAGAATTGTAGTAAGAAAGATGAACAAATGGTGTCGACTT
TTTCTAGTTTTTCGCAATACTGTCCAGCTTTTTTTTCAATTGAGATTAACTGTTCCTATTTTATGTCTAACTGGATTGTGTTTCAAGGTGCAATATACTCCACGTTAAAT
GCAAGATTGAAAGGTGAGAATGAAGGTTTGTGTTA
Protein sequenceShow/hide protein sequence
MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAV
SNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI